GgaINT0049400 @ galGal3
Intron Retention
Gene
ENSGALG00000009283 | KIAA1715
Description
NA
Coordinates
chr7:17492813-17499822:+
Coord C1 exon
chr7:17492813-17492853
Coord A exon
chr7:17492854-17499741
Coord C2 exon
chr7:17499742-17499822
Length
6888 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
GTGGAACCTTTTGTTTCCAGCTT
3' ss Score
4.6
Exon sequences
Seq C1 exon
ATGATGCGCTGGAAGATTTAAAATCTCAAAAGAAAAAAATA
Seq A exon
GTAAGTAAAACTGAAAGAAAAAATAGTTGTTGTGGTCCACTAAAATGTTTTTATCTCTACAAGCTCAGCTTGATGAAGATGCATAGATGAAAAGCAGAGACAGGCAGAGGAGGGGGGGAGGCTATTAGCGTTGCTCTGTTTTCACGTCTTTTCTAGTACTTCTGCCACACAGTAGTACTGGGCTGCTTGTGTATGAGAATAAATTCTCCTTGTAGTTTAAATTAAACCTCCTGTTTTATTGTTGCTAGATTTGTTGAGTGATTTAGCAAAAAATGCAAACGTGTTCTGTAAACTGCTTATTGCTGACTACTTGTTACTTTAGGATTATAAAGCGGTAGATATACGGATTCAAGAACATAGAGTCCAACTGAATTTTTAATAGATAACGTCATTTAATTTCTTGTTTATAAGTAGCAAAAATGACTAAAAGGGGGATTCACTTTTTCATCAAGTAACAGATTGTTTATATCTCAGATGCTTCCCCACTTAATTTCCATCCTCTTCCATCTTAGTTTTATACTATGTATTTATTGCTTATCTTCTTTTCCTCTTGAAGATGTATACTTTCTTGTATCAGTTCCATTGGTTATCTCCGGACTGTTTTTGTGAGCTGCGTGGATGAATTAACTGTATGAAACTGGTGTATGTGAGGTCTTTGTATCAGATGGATCAACACTTGATCTTGAAACAAATTTTGGATGGAGAAGGTANTGAGTCTTGGATAACTTGCACTGTTTGCAAAGTTCATAACACTGAAAGCTGTTTCATCTCTGGCTGGTCACTCTATAAGGAAACTGTGTGGCTTCATCTCAAGTCTCTCAGGGCAAAACTTAATGAAAAACACAAAACCTCCAACCAACAACAAAATCACAAATGCAGATCCTACCCCTGAAACATCCTCCTGTAGTTGCACTATGTGCCCTGTTTATGATTTTTTCCAAGTGTTTAACTTGTACCTTCTGGATTGTTTGTTCTAATAGCTAAATTAACAGAAAACCTACGGCAAAGCTACTAAAAAGGTGTCTGGTAAGAGTCTGAAATTATATGGCCTTCACAAGGCAAACAGAATTCACTGATCTTCCACCGGGCTGGAAGTACTTCGTAAACGTAAAAATGGTACGGTAAACTGTAACCTGATTATGTCATTGTCCTTTAGTAAAGAGGATTTGCTAATTTATATCTGCTAATCTTTATTTTAAGGAATCTATTAAATGGAAATGTCCTTTGGCTGTAGAGGTGATAAAAAGGGTTGGGGATGCTTGAATTTTGTAGGAATGAAATAAATGAATATGACAGCTGTATTTTTAATCTTATTTTGTGAAAACAATAACTGAAGTTAGTTAATCTTTCCAATTTACAGTTACTGAGTTGTTTTGAAGGGAGATTTTTGAGAACAGGAAAAGCTCGATGGAGAACAAACGTGCCTTTGGAGTCTTGAGTATACATCTCTCAATTTAAATATTTTCTGTGATCACAGTTCTAATATTCTTGAAGAAATAGTCATGCTGAACTTGTGTGTGGGTTTCTTGGCTTTTTTTTTTTTGGTAGATGAGACAAAATCAGGTAGATGAGTCAGGAAAAAAAATTGGGAGGTTTCTTTGCTTGGAATCAATGCCACTGAAACAGGAGGTAAATGTGTTGACTTTGCATATGCAGGATATATAATGTTAAAAAAAAAAAAAGTCAAAACAACAGCAGAATTGCAGCCTGTAATTATTGAAGACAAACTTGAGCTCAAATATTTTTCAGTCTGAGGGCAATAAAGTCTGTGATTATCTCCTGAGCTTGTGGGTGCTGATTCCTGGCAAGAAAGCAGAAAGCAAGTACTATAGCCTGCTGAATTGGTGTGGTGTTGGTTTTTTTTTTTTTGACTCAGAAGATTTTCTTGGAAGTTTTGTCATAGTTTAAAGGTATTTAATTAAGCTCGAATCCTACCGTGTTGAAATGAGCTGAAAACAGATGCAGGTAATGAGATATGACTAGAATTTGTATTCTCGATAAAAACATCTTAAAAATTGTTATATAACAATTATATAATAATGTGATTTTTAAAAAAATAATATTTAGATTTAGTTTTGGATTTGTATTAATTTCCTTAGTCCCATCAGTATCAACAAGTACCTGTAGTGATACCTACTTTGTAGTTAAACAAAGAAATGAAAACAAGGGAAAAAACAACCAACCTACCAAAGCATTCAAGCAAAGTAATGGGCAGGGAGAAGAACAAGATTTTTTTTATCTGTTGGATTCTAATTAGCCAGTGTATTTGCTAATAGAAATAGTTACTGAGGTTAACATAATGATCTTCAAACAACACTGGAATACATAAATTATGTATTTCCTGTTCATCTGTAATGTGGATTGTCTAGGCACTGTAAGCCTGCCACAATAGCTACAGTTTTTCTCTTTATTGAAGCTCAACTGCTTGACTCCTGGAGAAACTTTAAAGACTGTTGGTCTTTTGAGAAGTGTTACTACACTTGAGGTTTTCTGGCCTGTGGTCTATCTTTTCCCTAGTGATGCTCCTTAAGTTCCAAAGGCTGCCAACAACAGAGTAAGCTCCTCACCTACTAGATGGAAAGCCCTGGTGGCTGTGCCACGTGAGCTGCCAAATGGACCCCTCAGCTCTTCTCACAAGAGTTCAGCCTTTAGTAGCATAATCACATGGGTGGTAATGTGGGTGAAATATCTGACAAACATATTTCATCTTGAAATATCCATTAATATTATCTGTTGAGATTAAGTACACAGTGCGTATAATACTGCACAAGGTTGAGTCTGTACAGTATTGTTTCCTTAGTGGTCTAAAATATGCTGAGATTCTCTGTGGTATGGGGGTAAGAATTGAGTGTGTTAGCTGTAATTAAGGCACTGCTTCAATGTACAGCTTTTTTCATTGTTGATCAAAAGGAATACTCTAGTTGTGTTTGTGATACTGTAACTGTCTCTTTGGCCTTAGTTGTTCGTCAGTTAATGAAGTTGTCAACACTTAAGCCTGACGGTGTTTAGATGAGCAAGTTCAGAGGGTTAAGCAGATTAAAAGCAAGGGCACAGGACATGTATTAAGCTGCTAGAAGTGGGAATTAACAGAGACTTTACCTGGAGTAGCGGTCTTAAAGATGGGATAATTCTTAGCCTGAGGACAGAGTTGCTAAGATAGCATAGTAATTACTGACCATTGGGTGAGCCCAGCCATGCTTACTCAATATACATCAGAGTACTGCAGACTCACAATAGGAAGCTCAAAGTGTGGTTAAAAATTCTATTGGTGAATGATCAAGGTGTGTTTCTTGTAGATATGTTGCAGCGTTCATACAAAAGAGTTACTATTGTTGCTTAAATTACTTTATTTTCTATTTTAACCCTGCTTTTGTACGTGCTTGCTTATCTTATCCTGTAGATTGAAATTAATCTTCAGTCTTGCAGGAATGTAGAGAGATACTTCTCCATAGTGAGGTTTGACGTACCCAGTAATTTGGTTTAAGAGCTCACAAGGTAGTGTGGTGATTAAGTAGCTTGCACTGTGCGAATACTTCAGATTTCCATTTGCTAAATCACATTGACAAGATGCTTAGAATGCATTACTCATGTTCCTTTGCAGTATAGGCAACTGATGTAGTTTTTGCAGGAACTCTGGTTGTCATTTGGAAAGGAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTGCAGTTATCCATAGGAGAGAAAGTGGTACACGACCATGCTGCTTTATTAAGATGTGGCTAATTCTGCGAGTTAGTTTGGAGATCCACAAATAGGGTGGTATTAACTTTCATAGAGAATTCACTTGTGATTGTGGTTACTCAGCATTTTAGCTTGATAAATGGTGAATTTTGTTTTGGTAGGAGGTGGAAAATGTTTTTGTGGGGGGAAAAAAATTCAATCTCAGAGAAGGTTATTATGGAGAAGAGTGGAACTGTAGAGCAATTTGCTGTGTTCTTGAGCCGTTGTTCGGCACTAGGTAAACCTTTTCTGGGGTTGTTTCAAAGTAGTGAATGATCCAGAAGGCAATAATTTGATTTGCATTTATAAATGAATTTATGGTAGTGCACAAGCAAGTTTATTCTTCATGCGAACTTACAGTATTCGAAGCTTATACACACAAGCCATTATGTGTTTCTAGTAATCATACTCATTTGCTTAAGCAGAAAGGAAAGTTTGACCTCCTTACTACTTTTTTTTTATATTGTCAGCCAAATTTAACTGATTTCAGGAAATGTGTTCTAGAAGTGAAACCATGGGATTTGTGAGTGTTCTGATAGAAGAAATCTTGACAGTTTTTGGAAGTTTACAAGAAATTTGTAAAAGCTTGATTGCAGATATGAGTTATTCAGTTTCAGCTTTGCTGGATTTATAAAGCGATGTGTAAACTTCCAAATAGGAAGAATAACTTGTTGAATTATCCTGTAATTTGAAAATGTGTGAATGACTGTGACATCTGAATCTTGTGACAGGAAAGCATCAAGTGATGGTCGAGCATTCTGTTTTTTCTTCACCTAGAAGTCATCTTGTCTTGCTGAGCTTTTTCTCATTTTCCTGTGTTCCTATGAAGACAAATGCATGCATTATATGGTCATTTATGTAAAGTGACTTGGGGTTCGCTGCTCTTTCTGGTTTGCAGACCAGATATTGACACTGATCCTTAATGCTTCACCACTTTCCCTTGCTAACATCACCCATTTGTGCAAAGGACTGCCTCATGGTTTGCACTTTAATAAGCAATAAATGCTTTATTTTTCCTATTAGACTCTTAGTTCTGATCTTATTGCACTGTGTGGCATTTCTTTTATAAGTTAGTGGGTTAGCTCCTAAGTCTTGCAGAAATAAAAATTTAGGATATTCATTATTATTCTTACTTCCCTATTTGTTCCCTTTTTGTTTCAACAGTTCTTAATTAGCAGCTTGCATAGTATTCCTTGCCTTGAACTTCTGGTAGTGTGTGTAGGAGTGAGCTGTTAAATGGGTACTGTGTATCTGTTAAATGGAGTGGAATTTATTTATCTTCTGAGGTTTATTTGTGATTCTGAGGTTTCTCTAACGGTAAAAGCAACCAGTGCAAGGGCTGTATACGCAGAAAGGCTGAGATGTTAGTTTCTCGCTAGTGAAATACTTGCCTAAAAGTCATGTTAATGTGCACCATTTATTATTTTAGCAGTGATAAATGACTTTGAGGGAACGTAATTTTTTGACCACTGACCTTTTCAGTTTTGCAGCTTATGCCAACAGCAAATTTAACAAACAAACAAATAAGACCACTTTTAGCTGAGCGTGGCCATTAGTCAGCATATCCAAGAGAAAAGGTCTGCTTAAGATACTGTAAAATGCATTATAATTTCTATGTATATTTGCTATTTGTCATAACTTTAGCTATCTGTTTTAAAGTTAAGCTTCTTCTGATGTTGACTGTTAACCACTAAAATGATACTTTACTAGTGATTACTTTTTTAATTAAGCCCATGTATTAGCTATAAAGCCACTTGAGTGCATTGTAAATAAAACGCTGTAATAATGAAGTGCTTTAATTACACCCCCTAAAGTATGCAAAGTTCTCAGTAAATTTTTTTATTTAAATTCTTAACATGTTCCTTTTTTTTCTGTAAAGCAGTTTGAATTGCTGCAAAGATGGAGTTCTAGCCTTTAAAGTCATTTGAGCAAATTCCGTGGCTGTTCTCTAGTTAGTGAATTTTCACAGCGTTTGCAGCAAGCTAATTGCTTCTGCTAATAAATAATCTAAAATCGATGCTGACAGCAGTTAATTGGCACAGAGACTTTATTCTGTAAAGCACTTGGCTAACGACCTTCCTTAAATTAATAGCATTAAGTGCTGTGAGGAAATAAATCTAAGGAATTGCCTGTCATTTGCTTGTCATGTCTAATAACTTCCAATAATGATGGCTGATAGATTTTTGCACATTCCATTATTGAAGTTGGTGCATGTAATTATTCTCCTCATTATATGTAAACAATTAGCAATATTTGGTGTTTCCTTGCAATAAAGATGTTAAATACAGGTAGCCCGTTAGAGTTGCTAAACTTTTGGAAGCAAAATTTCATATCCATTGTAGGCACAAAATCTGCAGTTATCTGAAGATGTTATGTGAGTGATGTCTGAACGTGGCTCATTGAGTAGAGCTTCACTATTTGGTAACTTCTGTGTGTTGGTTGTAAATAGGTGTGTGTGAAGAAAATGCTGAAAGAATTCTGTTTTTATGTGTGGAACCTTTTGTTTCCAG
Seq C2 exon
CTTGAGGAAGTGATGGAGAAGGAAACTTACAAGACTGCTAAACTAATTCTTGAAAGGTTTGATCCAGATTCAAATGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009283:ENSGALT00000015103:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.037
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]