RnoINT0085905 @ rn6
Intron Retention
Gene
ENSRNOG00000001593 | Lnpk
Description
lunapark, ER junction formation factor [Source:RGD Symbol;Acc:1312042]
Coordinates
chr3:61464167-61467170:-
Coord C1 exon
chr3:61467130-61467170
Coord A exon
chr3:61464251-61467129
Coord C2 exon
chr3:61464167-61464250
Length
2879 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
ATGGAAATTTTTGTTTGTAGCTT
3' ss Score
4.49
Exon sequences
Seq C1 exon
ATGAAGCATTGGATGATTTAAAATCCCAGAAGAAAAAGATA
Seq A exon
GTAAGTTAAATTTTATTTAAAGTTAATTTATGTAAATCAGTTAAGAATTGGGTAAGTAATGCTTATATATTATAACAGTGATTCTCCAAGGAATACTTTTTGATAGTACTTTAATGTTGAAATTAAATTATGAATATTTAAGAGTTAATATACAGAAAAAAGTAGTTTAGGTGTGTGGATTTTTGAGATTATGAGAATATATGTTAATTGGGAGATAGGAAGTAGGTAAATAATTCACAACAGAGAACTAAATGAGGCACAAAGGGTATAAAGGTTAGTACCTAGATTGTGTTAGAGCCCCAAATGGAAGAAACATGGATCGTGTTAATTCTTAGGTTTCCTTAGTATTGTGATTCAGAGAGAGAGAGAGAAGGGGGGCGGACATCTAAAGTCTTTAATAAGCGAATTAATCTTGGTGTTTATCTTAGTGATTTTACCTATTTTCTTAGTATTAAATATGGAAATAGTGATAGTTGCTGACTGTATGATTATGTAGAAAATCATAAAATGAAATTAAAGTATATGTGGTCAGTTTCATGTATTTTTGTATAGCGTGTAATATATTGTATATAGTTTTCTGTTGATGTGACAAGTAGCAGAGGTAATCAAACTGACAATCTATTTTGGTTTCTGGCTTTTGAGATTTGAGCCCTTGGTCACTTGCCTGTGGTGGCACATATTTTATGACAGGGATATATATTATATAAAAATAATTTTAGATAAAATTGAAATCATAAAGGGGAGAATGGGATTGGTTTATTACTGTTTAAAATTTAATCTTATTTAAGGTAAATGAAACACAGACACACAAGTGATCGTTTACTGATCTGTTAGGAATAGCGTTGTTGAAATAGCATTTTGACTTTGAGTTCTCTGTTAAAGATTATCATTGTATCTAATCTTTTTAAAACTTTAAACCTTTTTCATCTTTTAAAGCCTTCCCCTACATAGATTGGTTATATTTACTATGTTATATAGGTCACTTGGTGCAAGTATGTACTGTCCATTGAACACATGCCCTCTCAGAGTCCCTGTGGCCCTGCCTCCATTGCTCTCCTTCGTTCCCATAGACAGTCACTCTGTCTTCATGTCATGGACATAGACATGGTTTTGTGTGGGTGTCAAATTTAGGAATCACATGTAGGAGAAAATCCACAGTGTTTTTCAGAGACTGACTTCATTTTCGTATTATGCTAATCATAAACCTAGCAATAGATTTTATCTGTAGCTATGCTGACTAAATCAGTAGCTACTTGTCACATTTGACTAGTTACATTTTCATTATTTATAGTGAAATAAACCTTTTTTTTTTTTTTTTTTTTTTTTTCCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCGAAATAAACCTATAAACTTAATTTCTAGGTCACAAAGCAACATTTTAAGTGTCCATTTACCATATTCATCTTCGTGACTTTATCGTGCCAGTGTAGGAGCATATCTGTCAGTACTGAGGTCTACTGGATAGTACAGGTGTAAAGTCTAATGAGAGAATCAGTTCTTTAATATTTCATGATGATGTTGATTTGGGGATGTATTTCATGATACTCTTTCTTTACCTCCATTACTAATTTTTCACTTGTCCAAAATGAATTTTATATAAGAAAATTGAAATTGCTTATCTTGAGAATTTATTATAATTTTGAAATAACTAGTAAAATATTTTAGTTTTACTAAATTGAGAGTTATAAATCATTCCTCTAAGAACTGAGATTCTTAAATTTTAACATTTAATGGGCAATCTATTAGCTATAATTGTGGCAAGACATTTCTTTGAAACATATGCTTTAACTAAGTAAATGTGGTGTGGGTCACTTTTGAAGATAAGTGTCCTTGGAATGAACAGGACATATAATGAATATAAGTGGTTATTGGTCACCAAGAAGGAAAGTCATGTTCCAATTTTTCCCAAAGCATTTTAAATTGCACGCTAATTATTTGTCATAACTGACTGTCTTGTACTAAAATTTAACTTTTTCTGATATTGGACCATAACTGTTGAAATGATATTTACTAGTGATTACTTACTTTTAAAATTGAACCCCCATATTAGGCTTATAAAGTGTCTTGAGAGCATTGTAAATAAAGTGCTACAACAGTGAGGCTTTTAGTTACAGTCCCTCCCTAGTGTGAGCCTAGAAGTCAGTAAAAACTTAAATTCTGCGATTGACTTCTTGTAAAGGTGTTTGGATGTGAGAGAAGAGGCGGGAGAAGCTTCTGAGCCACTTGAGCAGATTCCAGGGCTGTTCTCCCAGTTACAGTTCCCACCATGTCTGCAGCGAGCTAATTGCTTCTGCTAATAAATAATCTAAAATCCATGCTGACAGCAGTTAATTGGCACAGAGATTTTATTTTGTAAAGCTCTTGGCTAACGACCTTCTTAAATTAATAGCATTAAGTGCTGTGAGGAAATAAATCTGAGGAATTGCCTGTCATTTGCTTGTCATGTCTAATAACTTCCAATAATGATGGCTGATAGATTTTTGCACATTCCATTATTGAAGTTGGTGCATGTAATTATTCTCCTCATTATATGTAAACAATTAGCAATATTTGGTATTTCCTTGCAGTAAAGCTGTTAAAATACAAGTAACATACTAGAGGTTAGACACTATTTTAAAAGCTTGGATTTTTATTATTTGGTTGCAGGAAAATCTATCAATTTAGATACATTTGCTAGATATAAGTACAAAAAGGAGGGGGTGACTTTATCTTCCTTAATCCTGATTGATACTTTAATACAATTTGAATAGATTTATAAAAAATAAATAGTACATGTTTCAAAATACAATAATGGAAATTTTTGTTTGTAG
Seq C2 exon
CTTGAAGAAGTCATGGAAAAAGAAACTTATAAGACAGCAAAATTAATTCTTGAAAGGTTTGATCCAGACTCAAAGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001593:ENSRNOT00000068018:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.214 A=NA C2=0.107
Domain overlap (PFAM):
C1:
PF136871=DUF4153=PD(7.9=57.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]