MmuINT1022318 @ mm10
Intron Retention
Gene
ENSMUSG00000009207 | Lnpk
Description
lunapark, ER junction formation factor [Source:MGI Symbol;Acc:MGI:1918115]
Coordinates
chr2:74547975-74551101:-
Coord C1 exon
chr2:74551061-74551101
Coord A exon
chr2:74548059-74551060
Coord C2 exon
chr2:74547975-74548058
Length
3002 bp
Sequences
Splice sites
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
3' ss Seq
ATGGAAATTTTTGTTTGTAGCTT
3' ss Score
4.49
Exon sequences
Seq C1 exon
ATGAAGCATTGGATGATTTAAAATCCCAGAAGAAAAAGATA
Seq A exon
GTAAGTTAAATTTTATTTAAAGTTAATTTATATGAATCAGTTAAGAATTGGGTAATTAGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTTAATTCCCAGCAACCACATGGTGGCTCACAAACATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAAAGAGCAATAATGTACTCATCATATATATAAAATAAATAAAATCAAAAAAAAAAGAAAGAAAAAGAAAAAAAAGGAAAGAAAAGGGTAATTAATGCTTATATATTATACCTTAGTGATTCTCCAAGGAACCCTTTTTGACAGTATTTTAATGTTGAAATTAAATTATGATTTTCTTAAGTTAATATACAGGAAAAAGTAGTTTAGGTGTGTGGATTTTTGAATTCTGAGAATTTATGTTAATTGGAAGTCAAGAAGCAAGTAAATAATTCACATTGGAGAACTGAATGAGGCATGGAGGGTTAGAGCCTAGATTGTGTTAGAGCCCCACGGAAGAAACATGCGAGAGAAAGAGAGAGGGGGGGAGAGAGGGGGGGGGAGGAAGAGGGGAAGGAGAGAGAGGAAGGAGAGAGAGATTAGTGTGAGGTTGGCATCTAAAGTTTGTAACAAGTGAATTGATCTTGGTGTTTGTCTTAATGATTTTACATATTTTCTTAGTATTAAAGTATGGAAATGGTCGTAGTTGCTGATAGTATGATATTAAGTAGAAACTCATAAAATGAAATTTAATCAAGTATATATGGGCAGTTTTCTGTACTTTTGCCTAGAGTGTAATAAATTGTCTTAGTTTTCTGTTGATGTGACAGGGTAATCAACTTAAACTGAGGACAATTTATTTTGGTTTCTGGCTTTCAAGGTTTTAGCCCTTGGTCACTTGCCTGTGGTGGCACAGTATCTCATGACAGAGGTGCATATTGTATGAAAATAATTTTAGATAAATTGAAAAACATAAAGGAGAATGGGACTGGATTTATTAGTGTTTAAATTTAATCTTATTTAAGATAAATAAATGAAACACAGACACACAGGTGATTGTTTCCTGATCTGTCAGGAATAAAGTTGTTGAAATAGCATTTTGACTTTGAGTTTTCTGTTAAAGATTATAGTTGTATCTAATTTTAAAAAATTTTTAAAACCTTTTTATCTTTTAAAACCTTTCCCTACATATGTTCATTATTTATTATGTTCCATAGGATCACTTTGTACAAGTATATATTATATGTTGAGCACGTTCCATCTCATACTCCCTATGGTCCTTGCTTCCATTACTTCCCTTCGTTCCCATAGACAGTTCCACTTTCTCTTCTTGTCATGTATAGGGTTTTGTGTGTGTGCCAAATTTAGGAATCACATAATAGGAGAAAATGTACAATGTTTTTCGGAGACTGACTTAATTTTCTTATTATGCCAATCATAAACCTAGCAATAGATTTTATCTGTAGTTATGCTGATCGAATCAGTAGCTACTTGTCACATTTGACTATTTACATTTTCATTATTTATAGTGAAATAGAACTGTAAACTTAATTTCTAGGTCACAAAGCAACATTTTAAGTGTTTATTTACCATATTCATCTTAGTAACTTTACTGTGCCGATGTAGAAGCATTTCTGTCATTACTGAGAGCTCTGTTGCATAATATAGGTCTAAAAGTCTAGTGAGAGAGTCAATTATTTAATATTTCATGATGTTGATTCGGGGATGTATTTCATGATACTCTTTCTTTACCTCCATTCCTAATTTTTCACTAGCCCAAAATAAATTTTACGTAAGAAAATTGTTCATCTTGAGAATTTATTATAACTTTGAAATAACTAGTAAAATATTTTTGTTTTACTAAATTGTGATTTATAAATCATTCCTCTAAGGACTTAAATTTTTATGTTTAATGGGCAGTCTATTAACTATAATTGTGGCAAGGCATTTCTTTTAAAACTATGCTTTAACTAAGTAAATGTGATGTGAGCTGCTTATTAAGATAAGTGTCTTGGAATGAATAGGACAAATAACAAATATAACTGGTTATTGGTCACCAAGAAGGAAAGGGTCATGCTCCAGTTTTTCCAAAAGCATTTTATATTGCACACTAATTATTTGTCATAACTGACTGTCTTGTACTAAAATTTTGCTTTTTCTGATATTGGACCATAACTATTGAACTATTTACTAGTGATTCCTTACTTTTAAAACTGCACCCCCATATTAGGCTTACAAAGTGCTATAACAATGAAGCTTTTAATTACAGTCTCTAGCGTGAGCATAGATAGAACTTAGTAAAAACTTTACTTAAATTCCGTGATTGGTTTTTCTTCTTCTTCTAAAGATGTTTGAATCTAAGTAAGAAAAGAGGATGGGGGGAAGGTTTGTTTTTGAGTCACTTGAGCAAATTCCATGGCTGTTCCCTCAGCTAGAGTTTTCACCATGTTTGCAGCAAGCTAATTGCTTCTGCTAATAAATAATCTAAAATCGATGCTGACAGCAGTTAATTGGCACAGAGATTTTATTTTGTAAAGCTCTTGGCTAACGACCTTCTTAAATTAATAGCATTAAGTGCTGTGAGGAAATAAATCTGAGGAATTGCCTGTCATTTGCTTGTCATGTCTAATAACTTCCAATAATGATGGCTGATAGATTTTTGCACATTCCATTATTGAAGTTGGTGCATGTAATTATTCTCCTCATTATATGTAAACAATTAGTGATATTTGGTATTTCCTTGCAGAAAAGCTGTTAAAATGCAAGTAACATATTAGAAGTTAGACACTATTTTAAAAGCTTAGATTTTTATTATTTGATTGCAGGAAAATCTTTCGATTTAGATACATTTGCTAGATATAAGTACAAAAAGGAAGGAGTGACTTTATCTTCCTTAATTCTAAGATTGATACTTTAATACCTTTTGAATAAGATTTATAAAAAATTAATAGTATATGTTTCAAAATTTGACAATTAATGGAAATTTTTGTTTGTAG
Seq C2 exon
CTTGAAGAAGTCATGGAAAAAGAAACTTATAAGACAGCTAAGTTAATTCTTGAAAGGTTTGATCCAGACTCAAAGAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000009207:ENSMUST00000064503:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=NA C2=0.092
Domain overlap (PFAM):
C1:
PF136871=DUF4153=PD(9.7=71.4)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types