GgaINT0054919 @ galGal3
Intron Retention
Gene
ENSGALG00000009050 | CAPN3
Description
NA
Coordinates
chr5:27830465-27831085:+
Coord C1 exon
chr5:27830465-27830550
Coord A exon
chr5:27830551-27831007
Coord C2 exon
chr5:27831008-27831085
Length
457 bp
Sequences
Splice sites
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
3' ss Seq
GCTTGTTTACACTTTTGCAGATC
3' ss Score
8.95
Exon sequences
Seq C1 exon
ACAACATATAAAGGGGAAAAGATGCGTCTGGTAAGGCTGAGAAACCCGTGGGGACAGGTGGAATGGAATGGACCTTGGAGTGATAA
Seq A exon
GTGAGTAGAAAGTGTCTAGGAGCTTCATTTGATTTAGGAAAAAAAATAAATTGCAGCTTTATTTGCCTTTTGCAGCTGGTGTATGGCCCTCACATTTAACAACGAGGTATCAGGTTTTACTGAGAGAGAGTTCAGTAGCTACTCCATCAGTGAGTTTGCAAGCACTTCTGTCTTCAAGCTAAGCAACATAAACATGTTTATTTTTTATTTCTGAGAGCTTCTAATAGGAAGTCTGAAGGGAAGGCAGAGTGAAGCAGGGCAGTTTCTTCTCCATTTGAATGTATGGAGATGGAAACACTGAGAACAAATAGTTGCAGAAATCAGAAAGGAACATTTATGTGAATGTAGAACAACAGTGCTTGACTTTCCTCACTAACGAGGCTTACAGTAAAGAACAGGAATATAAATGAAAATTGGGTATTACAAAATGTAATGTAGCTTGTTTACACTTTTGCAG
Seq C2 exon
ATCAGAAGAGTGGAACTTCATTGATGAAGAAGAGAAAACCCGCCTGCAACACAAGATTGCAGAAGATGGGGAATTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050:ENSGALT00000032636:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.2=100)
A:
NA
C2:
PF0064816=Peptidase_C2=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]