GgaINT0054925 @ galGal3
Intron Retention
Gene
ENSGALG00000009050 | CAPN3
Description
NA
Coordinates
chr5:27835189-27837319:+
Coord C1 exon
chr5:27835189-27835192
Coord A exon
chr5:27835193-27837217
Coord C2 exon
chr5:27837218-27837319
Length
2025 bp
Sequences
Splice sites
5' ss Seq
AGTGTCACA
5' ss Score
-14.17
3' ss Seq
TCTCTTCCTTCTTCTTCTAGCCT
3' ss Score
10.43
Exon sequences
Seq C1 exon
GAGT
Seq A exon
GTCACATTTAGGGAAACCCATAGCAGGAAACTATTTGCAGCCACATGACAGCTCCTTTAACAAATTCCCACATATTCTGATCAAGATATTCCTATTAACACTTGACTTGGTATATGCTGCTTTCTGATTTGGACAGACCAGAATCTTTTGCCAGGTTTGAGATTTGTTCTTGGCATAAAGAACCTCACGCGAAGCATTGCCTTTGCTTCCAGCAGTTGAGAATGTTCATGCTCCGGTGGAGGCCTAGCCATCCTTTGGGATGTTTTTTGTTTGTGTGTCTGGCAACTCATCTAATCAAGAAAAAGAGTGCCTTATTTTGAAGTATGAGCTTTCTGAAAAGGGATTCTATTAGTATTGTGATTCAAACTAGCATCCATGACAAACGAACTCTTCAGCCTGGGGTTTTACACATCTGTATGGGAATAAATTGGGGCATACAACACACTCAGTCTTGAAAAAAAAACAGAATGCTCTTGCATGGAACTGAGCTCCATCTTGTTCAGAAGCCTTCCCCTTCCATTTGCTGTCATAATACCAAAATTTCTGCCTAGATCTGATGGAATTGAATTGCCACTCCAAAAAGCATGAATATGTGGGCACAGAGGTCCAATCTACACTGCACTGATTTGTTGGGAAAAATAAAAGGAGTAATTAGGGTTAATGTATTTGATTCAAGTAGATAAAGCCCAAGAGGTGATGGCCTGTTGAAATTGCAGAAGCCATATCAAAACAGCAGTCCGTTTCTTTGTGGCTGCATTTTCCCCTCTTTTTTTTTTTTCTTTTCTCTCTCTTTTTTTTTTTAATTTATTTTTGAGATTTGAAATCAATGTGAATATATAAAATTGAAGGAAAAAGTACGACTATAGGAATGGGAAACACAAATATGAGAAAGTGAAAGAAAAAAGGAAACATTGCTATTTAATAATGTGATCTGGTACAATCCATAATTCTTTTTAAAAACACTTCTTTTCCTACTTTGTTTCTGTTTGTACAGAAGAAGAAAAAAGGCAAGGTGGGTACCTGTGCAACGTGCTGAGCATCAAAAGGCAAGATGCATGTGCAGTGCATGCAGCAGGAGTTACTTGCTACCATTAGTGATTTCTCTGCTTCTGGAAGCTGATCTAGTTAATAAAGAACACTGGACAAGAAACCATTTTCAGGCAGCGAAGACTTCGTCTTCTTATACAAAAATCTAATGAAGTACAGCGATAGCATCAGGTATTTCTCTTTCTTATGAGGGTGGCAAAAGCATAAGCCTTCCAGTTTTATGAACTTGATTCTTTAAGTTTCTCAAGTATCCTGCCTGCCTGACCCTCCACAGGCATCCTGACACCTCTCCCAGTGAGAAGCTCCCCTCCTCCGGACACACACCCTCAGTTGCCCAATGCAGCTACTCCTTCCTGCAGTTTCTGCTCACCAGAGTCCTTTTTGAGTCTATGCAATACATTTAGCAAACAAAAAAAAAAGCATACTCTGAGGTTACAAGGAAAATTATCAGCCAGAGGAAGGGTATAAAAAGGCCCACAAGGGAGAGATTTTGAAGAGGAGAGTGGCTGACTCCAATTTGCATTCCTCTTTCATACGTACCCAAAGTAGACCACAAACCTTCAGAGCAACACATAGGAGAGTGAACTCTGCTTCTTACAAGGACCTTGAAAATGTAACCAGACACTTTAATCTCAACACCGGTCAATTGCAATTATTGCTGCAGGATAACACATTCACATCTGATAGCAGCTTTCTTTGCTTCAAATACACTAAAGCAGAACAACTACATGTGTCTCCCTACAGTTGAGAACTAACACATGCCTCATGTAATTAACAAGCTCCTACACAAGCTCTGCAGATTTCTTTTTTAACATGAGGATAGTAGTAACCTAAGAAATTCCTCTGTTCTTTTTTTTTTTTTTTTAATTCCCAGATCTGGCTGCATGTGCTTTGCCACAGAATGGACATCCCCAGATACTTTTCCTAACACTATTTCCTGTGTAATTTCTACTTCTGCTCTCTTCCTTCTTCTTCTAG
Seq C2 exon
CCTATCATCTTTGTTTCTGACAGAGCAAACAGCAACAAGGAGCTGACAACAGACGAAGATGCTGGCAAAGATGGTGAAAAAACCCACGTAGATGAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009050:ENSGALT00000032636:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.647
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]