GgaINT0071081 @ galGal3
Intron Retention
Gene
ENSGALG00000011078 | PTPN13
Description
NA
Coordinates
chr4:47296091-47303757:-
Coord C1 exon
chr4:47303649-47303757
Coord A exon
chr4:47296311-47303648
Coord C2 exon
chr4:47296091-47296310
Length
7338 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
CCCCTCTGACTGTGTAGCAGGCA
3' ss Score
4.67
Exon sequences
Seq C1 exon
GTTTGCCAGTGAGAAGAAATGAAGGATTCAAGAGAGATGATGCCGGTGGTGCTTTACCAGGTGCTGATGATATCTCCACATCAAGTCAAGCTCATTCTCAGAGGGCAAG
Seq A exon
GTAAACCATGTGACAGCAGTGTGTCTTGGAATGCTCAGTCTCTATCGGAGAAATTACTGTAAATCTGCGAGCAAATTTTTCATGGCCTTCTGTGTGACATTAGTAAACTGCACGTTGGACATAAAAGCATATCAGAATTACATACTGCAGTCAATAAAAGTCTCATCATACACTGTGGTATACAGGTAACTATACCAGCCAGGAGTCTAAACTCAGATCCTATATTTATTCAAGATGGGACGGGCTGCACTCTGTCTTATTGCTGTATTTGATAAAGGTCAGAGCTTATGTTCTGCTTGGAAATACTGAAATCATTTGTAATTTGATTATACTTTTCTAAAAGTTTTAGAAAGTATTGATATCAGTAAGTATTATTTTGAAGTGTGCTCACTTAATAATGGAACTATAACATATAATTGCTTTAAAATAAGCCAGCAGCTGTCCATGTAGTTGCTTCATCTGACAAGCACTCGGTTTCTCTTGGTGTTCCATTGTCTTTTTGCTTTTGTATAACCTCAGCACTGACTAGGCAGGCCTATTTATTAACAGTTGCTTTCTGAATTGCCTTTTAATATTATATATGTTGGAATATTGAGTCTGTACATTGTTGTCATTTTTTGTTTAATTTCTTTTACAAATGCTGTTCATCGATACTGCTTTAAAAAGTGGGTTCTGCTTTGTACTACGCCTTAGTACAGCAGCAGCTGCTCTGACCATACCTGCTGGGTTGTGTGAGTGCTTCTATCTTAAGTGTTTGGGCATCTTTCACACGTGGACCTTTTAGATGGAAAATGTTCTTTTAGTCTCTGTCAGATGCTGAGTCACCGTGACGTACTTGATCAAAATGATTGAAACTGCTTTTATTGTGGAAGCAGGAGAGGCTGGGACGTGTTTCCTTTCTTCATTGCAACAACATCAGCCATCTCATCTCTTTTGTTTGGGATGGCTCAGGGGAATGATAGCTCAATATTTTAGGATATTTGTAACTTTCTATCATGGTGTTTCAGGGTACATTTGGATCTGAGAGACGGGATGTCTGAGGAGCAGAGGCAAGCAAAACATGCCTTCAGAGCAACACAGATGGCTATGGGTCCCACTCAACATACACACACACACACACACAGGCATCCATTTTAGATAATCCCCGTGAGCAGGAAGCGGAAACTCCCTGAGCAAGTGCACTATTACTTACCGACCCTTGAGAGACAGCAAACCTTTCAGGAGAGAGAAGGACTGTGCTGGCAGTGGATTTGATAGGTAGTGCCAATAGGGTATCCCCTGCTTTAAGGTGCACTTTTCCTCTCTCTCCTACTGCAGCTTCTCTCCTGCTTTTATTCTCCCCAGGGTCTTCAGGGTTTTTTCCACTTGCACACTGTACCCACACAGTCAATGCATGATACAGAGCCCAAGTGGAACACCTGCTTGCAAAACATGTCTTTGCAAAAACAAGATCAACAAAGTCAGCTCTCTCTACAAAACAAGAAATTTGCAGCTTACAGCCACAAATACCAGTTCCCTTAAAACTGCCAAAATACTTTGTTCCATCCCAGGATCATTCTTCAGTCAGGGGGCCTTTAGGTCCCTGACACAGATGGGCTAGATGAAAATCTTCTTTTATTCTACTAAAGAAACTCAGAGTTGTCTGCCAATTGTAGCTGTTTGAGGTGCTGTGGCCAGGCTGTTGAATGTGCCTGTGTTTTTTTGGCCTGTAGGGTGCTGTGCAGTGAGAAGGGCAAAGAGCCATGCTCTGACCGTGGAGATTAAAATGAAGGAACATCTGCTTCCTACACTGCATTATGTGCCCCGAATGCATCTGAGTGAGGCAGGGTCAAAGATGATCTGTGAGTGGAGTGCCGATTAGCAGAAGAAAGGTGACTTGGAAGTGTTATTTGGTCTGCCGAGATGACACATTGCTTTCTTACCACTTGCACTGTGCCTGAAAACTGTAGATTATTTAGAAGTATGTGTGTTGGCAAATATATATAATGGCTTTTCTTGTAGTGGGAAGGTATTTAAGCATTGCTTAGCTGGGTGAATACTTTATTGGTGGTTGGAATGCATGTAACCCTGGCAAATCATAGAATCATTTGAATTGGAAGGGACCCTTAAAGGTCATCTAGTCCAACTCCCCTGCAATGAACAGGGACATTTGCAGTTAGATCAGGGCCCCGTCCAGACTGACATTGAGTGTCTCCAAGGGTGGGGCTTTTACCACCTTTCTGGACAACTGTATGAGTGCTTCAACACCACCCTTGTGTAAAAAAACTTCTTTCTTGTATCCAGTCTAAATTTACCCTCTTTTAGTTTGAAACCATTTCCCCTTGTCTGTCACAACAGACCCTGCTAAAGAGTCTGTCTCCTTCTTTTTTTATAGCCCCCTTTTAGATATTTGTAGTCCCCCTGGAGCTTTCTCTTCTCCATGCTGAACAGTCTCAGCTCTCTCAGCCTGTCCTCACAGGAGAGGTGTTCCCTTGGATCATCTCCTCTGGATGCTGTCTAACAGGTCCATGTCTCTCCTGTCCTGAGGACTCGATATCTGAATGTGGTACTCCAGGTGAGGTCTCACCAGCACAGGATAGAGGGGGCAGGATCATCTCCCTCTCCCTGCTGACCATGCTTCCTTGGATGCAGTCCAGGATATGGTTGGTTTTTTGGGCTGTGAGGGCACATTGCTGGCTCATGTCCAGCTTTCCATCTACCAGTATGCCCAAGTCTTTTTGGTTGAGCAATCTCTGTCTTTACATTCCCCAGCTTGTACTGATAGTGAGAGTTGCCATGATGCAGGTGCAAGACCAGGAGGTGATAAGGAGTAAAAGGCTCTACATTTGTGCTTCCAGTTGTATGCTGCCCCAGCACTGCACTAGAATGTTCAGACAGTTCACTTAACACTGTGTGCACAGACTGAGCTCTGAGCTTTCTTCACTCTTTTGCCATTGTTTCTTTCTTGATGAGCACTTTGAAGTCAGCCCTGTTTCCACAGCAGGTTTGAATTCAACGCATGGAAGCTGCCAGTTCAACACTGTGGCTGTACTTAAGAATGAGCCAGCAGTAATTGGTGGATGCTGATAGAGAACTTTTATATCTGTTTGCAAAACATTTCAGAAACTGACTGTCGTGTGTGATATGGAAGCAAGTCACACTGCTGTCAACTAATCAGGCCCGTTATGGAAGTGAAAGTGCTACCATTAAACATAGCAGACTTTCTCATGGTTCATTTTACAATGTACCATCTCACTTTATATTGCTCTTTTAAGACTGGTGCTTTTAATAGAACTTGTTTGTGTACATGTGGAATTCTGAAGAAAAATACTACTCAGTATGCGCAGCATGGAATCATCTTCGCTTAGCAATGGTGTGAACCTTACACTGATGTAACTCTGCAGTCTTCCTCCAAGGCCTGGTATTCATTTGAGTCTACTGGTGTTGCTTGGCTTCATATCTGTGCTTGTGCTAAGAGATACTGTTCTACAGCTGCATGAGAAATGGTGTAGAAGGGTACCACAAGTTCCTTACTGATTTCCATACTTGTCCTTCCATTTCCTTAGACTAAAAAAAGCTTTTTTCTGCTGAAGAACCACATGTGTAATTATAGTCAAGATTAAAAAAAAGGCTCAACTCTTGAAAGCAAATTTTACGTTTTTGTAGACCCATTGCAAAACAGCAAAGCAGCTGGGAGCAGAATTTGTTGCTACAATAATAGTTTGATAATATCTCTGTTAATTACATGAGCTGAATGGAAGGCAGGGCTAGCTAGCTTCTTCTTTTTCATTCTCCAATTGCTGCTAAAGCTTTGCAGTTCTATGCAGTGTAGAATGGAGCACCATCAAAGATGGTAACAGAATTCAGCAGGGACATTTCTGGGGAAGTAATGCACTGTTTGTATCCAGAATATTGCATGTTGCTTCTTCAGAATGTTCTGTGCTACTGAAGACTGTGGCTTTCCTGGCTTCAGAAACACTCTTTCGAAGTAAAGTACTTGCTGACAAATAGTTCTAAGAAGCACATTCTCAGAGGTTTGGGGGTTTTGGCTCATCGTTTGATTTCAGGGTTTGGGGCAGTATGTGACTGAATCTCAAGCTTGAATCCTTTCAGCAGTTGGGAGCAGTTTTAGTGCTCAGAGATACCATCTATACTTCAGTGCATTTTAAATGTACTGCTCCTGTAGCATGTCATTAGAGACAGTCTGTTTAATTACCTGTGGAATGAAACTCATACAATTGAGGTATAGCAAATGGGGGAATCTGGATCAAAGGGAATCTGCAGCCAATACTAAGCAAGCAGTAAAGCTGCTCATTTACCAGGCTGTGGGACTCATGCTGCAGCCTGCTCCTGAGCTAGCAGAAGCCATCACATTTTTTTTTAGTAGTTTTAGAGTAAGGTGAAACCCTTCTTGTGTTCTGTCACCGCTGTTACCCTTTGAACTTCTTGGAATCCTTTCCTTGTGGCAATGAATTGTGCCTGTTTTTCCTCTTTGCTTCTTGTATTTCTGATTTTTGTCCTTTTTTCTCTTTTTCCTCCTTCACTATTTCTTCCTTTTTCTCTCCAGGAGCAGCTGCTGACACGGATCTTTTCCTTCTGTTCCCTTTCCTTCCACTCCCCACTACATTCCATTTGCATCTCCGTCCTCTCCTACCCAAATGCATCACTCTTTCTCCGTCTCTCCCTGACCTTCCCACTGCACTATCACAGAATGTCAACCCGCTTCCCTTCTTCCAGCCTCCTCCTCTGACCCAATCTGTGCTAATTCTTGGTAAGTACACTGGGTGAGGTTCTATATACACTTGCTGCTTTTGGAGTTGGCCATCTGTGTGATGGCTCACCTGCCATCTGTGGGTTCATGAGCAGCTGTAGGGCAGTGATTTGCACTCAAACACAGATGAAAATATAGAGTGGCAATCAAGTGCTTGCCTCATGGGGAACCGAAGGAAAAACACTTTTATCTGCCATGCTATCTGTTAGGAATGGAATTTGGAGTTTTTGGTGGGAGTAATAATACCTGCATGTTCCACATTTCTCAGAAGTGCTCTGCCTGTATCTGTCAACAGTATCTTCTCTACTGACAAAGGAGAGGTGCAGTCCTGATCTTGGAAGCCTGAGAGTGGACTATACTCCACCTTCCATTGAAAGCTGTCTGCCTGAGCCTGGCATTAACCAAGATGTCAATTTGCTTTCTCGAAGTGATGACAGCATTTGTATCCTGCACCAGAAAAATGCTTGAAGCAGTACATTTTTGAGCTTCCTCCCACTTGCCCCCATGCAGTATTTCAGTAAAATGCATGTGAATTTAGAAGACAAAGCAGTGTAAGGGTACTATTTTGCACAGTAACTTCTGATTGCTATTGCATGTCTGTGTGCTATTGGAAAGGCACTTTTTTTTCAGCAGTTGGCATTTTCACTTATGTGAAAGTGCTTTCAGATAAAACCAGCTGCAACACGTCTCACTTTTTCATATCATCTTTGATAATTCACAGATACTTATGTTCAGAAGGAGTTTTGGTTTTGTTTCGTGCTGTTTTTTTTTCATTTCAGAGCCCATCCTTAGACCTTGATCTGGAGAGCGCTCGTGGGCATATTTAAGTAACTTCATTGTGAATATTCCCACGTACGTTGATCTTAATAAACCTCCTCTCTGCGAAAAGCTGAGATTGTGCACAAGTCCCTGCAGGTCTGGGGCCTTTCCTCATTGCTGTGTCCTTTTGGGTACACATTATTAAGTCTGTTGCAGTGAGGAGCAGAGGAGGGGAAAGGGGAGCACTGTTATGAAGGCCCAGAACAGTGGGAAGGATAATGGGTTAACATGAACGCCATCCTCCATTACTCCTCCAGACCTTCCCTGAAATTCCGTTGGAGGATTCAGTGTTATTTTGCTTTGTTCTTGGCACATCGTTGCCATATTATTGTTTGGGCTTTTCCACCGTAACGTGAATTTGTATTTCAAGACTGCTTTTGTCTTGGCTGTTTATCGGCCAGTGAAACTTCAATCTCAGGACGTTTCAGAGGACGTTCTGTGTGGCTCTCACTTCTGACATTCATTAGAAACTGTGCTGTGTGATGATGGAAGTAAATTTGACATTACGCCCTCAAATTATCACAGACAATGGTGCTGTCTGCACAGAGGCATTTTCTTTTACTTCTTAATTGTACATCAAACACATTTGGGTTCTGATAAGAGGCAGCTATGTAAATTGTGTCCTAAAAAGTCTCTGTAAATGACCTTCTTACTACCAAGAGCTCTACATCAGTGTCAGCGAAGGACTTGATTTTACATTTATCTGTATTCCTGAATTTCAGCAATGTAAAGGATTCAGAGCACTTTCTATGTTTTTCGTTGCTCCAGCGTGCCGTCAAATCTGGCTTAGCTTAGAATTGGAATTATTAATACAACTAATGATGGGTTGTTAGCAAAGTGAACTGAGCTTGCTGTTGTCCCAGGTGCCTGTGTTAAATGTGCCTTTGTTAAATGTGCTTTTTGGCGGATGAAAGTTCTCTTAAGTTCCCCTACCTACTTCTGTTTAAAAATCATCTCTAATTCTCTATACAGGAGAAGAACATTATTTTTTCTTGGTTTAGGATTTCTGAAGATTCTTGATTCATTTGTTTTGAGTTTGGGGTTTAGAAGTGTTTTTCCGTACGTATGGGAGACAGGGAGAGGAGTGAAAATTATTTTGTTCTTTTTTCACCTTTTTCTGCATTGCCAAATATCTTGATTTTCAAATAGAAAATGGCCCCCATCCAGCTGAAATGGGATATGGCTTTTTTTCCCTAATGAAAATAGATGAAATTGTCGGGACATGTGCTGATACAAGAACTGAAAGCTCATTTGCTGTTTTCTCAGAAATAGAGGGATTTTTTATTTTGCTTGCTTGCTTTTTTTTTCCCCAGCTGCTTCATTTAGATTCTTACTTATTACCATGCCTGTGTATCAGTGAAGCCATTTTTAGCATTTTAAAAGAAACGTTTATTTTTTTCTGTTTGAAAAAGATGATGAAAACATTCGATTATTCTATTTAGAATAACTTAGGATGCTGATATGCGTACAGTGTCACGTATCTTTCAGACTGCATTTGAACATTTATTTTTATACAAATAAATGGCAGTTTTGCAGTTGTAGAAACTTGGCGTGTTCTGCTCATTTTCCATACTGATTGTTTGCTGTAGAGTGCTTCAGTCCGGATGTGCTGTGTTCATCTCCTGGCTGCTGAATAAATGTTGAGTTTAACGCAGTATTTGTTAGTGGCTTGTTGATGTTTCTGGTTTTTCACTTTGGGAAGTGCTTAACGCAGAAGAATGTCTGATTCCTACTGGTAATGACTTTTATCCCCTCTGACTGTGTAGCAG
Seq C2 exon
GCAGCATGAAGCACCATTTGAAGGCAATCTCGTCAGTCAAGAAGCAATGCTAAAGCGCCAGGAAGAAGAAATGCTACAGCTGCAGGCTCGCATGGCTCTCAGGCAGTCCCGGCCCAACCTCTACTCTGGAGATGCAATCCGGTCCTCTATGCTGGATATCACAAGAGATCCACTCAGAGAAATAGCCCTGGAAACAGCCATGACTCAAAGGAAACTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011078:ENSGALT00000018046:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.973 A=NA C2=0.339
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]