RnoINT0120002 @ rn6
Intron Retention
Gene
ENSRNOG00000002061 | Ptpn13
Description
protein tyrosine phosphatase, non-receptor type 13 [Source:RGD Symbol;Acc:1563360]
Coordinates
chr14:7762497-7767745:-
Coord C1 exon
chr14:7767664-7767745
Coord A exon
chr14:7762720-7767663
Coord C2 exon
chr14:7762497-7762719
Length
4944 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
TTTTTCTCTTTTCTCTGCAGTAG
3' ss Score
10.24
Exon sequences
Seq C1 exon
TGAGAAAAAGCGAAGCTTCCAAGAGGTTTGAATCCAGCAGTGGTCTTCCCGGAGTAGATGACACTGTCCAGTCACGACCCAG
Seq A exon
GTATGGCTTTGGAAAGTGCTAACTGCTAGTCCCAGTCGGTTGGTTTTGGTTTCGTTTGGTTCTGTCCTGTTTGGTTTGGTTTTCATTAATTACAGTTGGCATGTGACTTCTTAAATTGTCAGAAAAATAGATATATAACACTCGAGGTTAAGACATGGTGCTAAAAATCTGTGAAAACTGTAAACCTTTGTTTCTAAAATGCAAATAACTGATTTCTACCTTGAAAGGCGGGGGCAGCCTCGGGTATTCAGCGTGAAGTGGTTGAATGATAATTAGATAACCGCTGTGTGAACCATTAAGTAAGACGTTAATTACTCACTGGTTGGCTCACCGAGGCTCTCCGCCATATTTCTGACGCCCCTTTGGGCTGTGTAGTGCTCAGCTTCGAACTGAAATACTTGACAAGTCTCTTATGAGATGTTAGTGTCTGTGCTAGATCCAGGGCAGTTGTGTAACAGTCACGTGAACCCCACTTCGTTGAAACCGAAAGAGCTCTCAGGCAAGTGCTCGGCGTATCAATGTATATCGTGGGCACATGGACACAGCTGCCTAAACACAGAACGCTGACTTGAGATTTGTGAAATACACTTGAGATCCAACATTGGCCTGGAAGTGTATTCCCGAAGCATGAGAACTCTAAACTCACGGTTTACTTCAGGTGCTTTTGATTCTAGGGGAATCATCCAGAAAATTTTAAATATGTGTCCCTTAGCTAATGAATATGCCAGACACCGTCCATACCTGTAAACTATTAATAGACCATGTAATCCTGGCCGTGTGAGTAAAGCAGGTAATCATCGCTGTGGTTCAGATCGTCACGCCCATGTACTAAAACAATTACTACTTAATGGCCCACATTCTTTTCTTCCATTCTTTGAAATATCTGTAATAGTTTTTCTTCACAGAAAATAATTTTCTATGAACATAATGGCATTTTAATTACTACTTTGTTGTGATGAACTATTATTATTATTATCATTATTATTACTATTTTGAGACAAGGGGGAGGCAAAGATAGTCTGTAGTCAGTATTTCATGCTTTCTTGAAGAATCCCAAGCATTGGAATGTGTAGTAAGAAGCCAGGGTTAAATTGCATTACACTCTGCCCTGAGCCCAGGGAGACGTATTTTAGGACTCTCCTCTTTGATAATGTCTGATTTAGAAAAACTAAATACTCAGCATCCCCTTTTGGCTTCAGTGAAAGAAGTAATAGAGATAACAATTAGAAAAAACACCGAGCTTACGTATTGACTCAGATCCCAGCCTGTTATTTAAGGAAACATTTTTTCAAAACAATTAAGTCATCTTGGAAACTGTGTCTGTTTTCTCAATAACGAATCTGAAACCCGTGAATCATGAGAGACTTGATTTTGCCCCTCTTGAGTTTTATGTAAGAAAATGTGAACAGTGTAGGGCCACCTTAATTTGCCAACCCATGTTTTAACGGTAAACTGTCTTTGGGGGACAGGCTCTATCTGGTGCTCACAGGAACCAAATTAGAAATAAATGTGGGGGAGAGAAGTCTGGGGCAAGGTGGCCCTACAGTGCACATGGGCTGTCTCACCTCCTGCCCACAGAAGTACACACTGGCTGAGATACCGTCAGAGCCCCTAGAGCACAGGCTCTCCTGTGTGTGGGCCAGCATTTCTGATGACACCCTCCCTGTGTCAGCACACAGCCACGAGCGCCTGATGTGTTCTACGGGTGGCACTGTATCTTTACACGGTGTATGAGAAAATGAACATTCCCTCCAGCCAAAGATACCCAGAGCTGCTTGCCAAGGCCATCTCCTCGCCTTTTCACGTGCTTTAGCTGAGGTGATGTCACAGTGCCTTTCCCCCAGTGCTTTGCACCTCTCTGCTGTCGGTGGGACTCCTCCTTCCCCTGTATGTCACCACACCTCTCCCTGAGTGCAGCCCACAGTGGACTCACTCTCCAGCCGCGAATCCCGGCCTGCAGCTCCTTGTTTCTGTATCTCAAGTGCTTCAGTTCTTGATGAGATGTTTCTCATCTACAGGGAAGAGACAAACTCTTAAGTCTTTTCTGCTGTTAAGAGTGGTCCTAGTTAATGAAATCCACTTAATGAAATGTATTATTGGAGTTACAACGCACAGACTCCAGCCCTTCCTTCCTGCCATGAGTGAGACTCCAGGCGAGGTCAAGCACAGGACCACATTCGCTCACACACTCAGCAGCTGCTGGGCACCCACCACGGAGCAGACGCTTAGGAACCAGAGGAAGAGCTGTGAACTGCACAGACACAGCTCGCCCTGGAGATCACTGGAGATGAGAGGCAGCCACCAGACAGCATGTTGAAGAGCAGCAGCCATGTCAGGAAGGGGTTTCTGAACCCTGCTTCATGGGCTCGTGTGATCAGAGCAGGTGTCCCTCAAGGGGTGACACCAAGCATAAAACTCAAGTGACGGAGAGGGCGCAGAGGCTGCAGTAGGGGAGGTGCTGGGTAGTTAGTTCTATATCAGCTCAGCACAAGCCAAAGCTGTCAGAGAAGAGGGACCTCAGTTTAAAAAATGCCTGCTTCAAACTAGGCTGGAGGCTGGCCTGTAAGACATTTTCTTAACTAGTGATGGATAGAGAAAAGTCCAGCCCATTGTGGGTGATGTCATCCTTGGGCTGGTGGTCCTTGGATTCTATAAGAAGCAGGCTGAGCCAGCCATGGGGTGTAAGCCAGTGAGCAGCACCCTCCATGGCCTCAGCTCCTGCCTCCAGGTTCCTGCCCCTTGTGAGTTCCTGCCCTGACTTCCTTCAGTGATGAGCTGTTGCCCACCTGGCTTTTGGCCATGGTGTTCCCCATAGCAATAACAATGTTAGCTATGAGAGGGAGTCACCTCTACTGTAACAGTGAAGAAGCAGTATGCCCGCAACAAAGTGAACAGAGGACGTTGTACACTAGGGATGGTTGCCAAGGAGTCAGGGCCCCAGTAGGTGAGCATGTCATAGATGCTAAGGTAAGGACTCAACATGTTGGGGAAGCCATGGATCACTGAAAGCACAAAACATCAAGATGTAACTTAACATTAGTGTCTTGTTTCATGATAGGAGAGCAGAACTGCAGTCGGAAAGTAGGTAATGCAGATGGCTCGTAGTCAGTCACTGCCGGAGGGAAGCCAGATGTGGCTCTTACGGGCTGTGCCCACAGGATTCGATGCCTAATGAGATTGGTGGCTTATAAGGAAGGAGAAATAAGAATGACACTTAAGGTCGTGTCCTTAGCAACCGGTAAATAATTGCAGGAAGGTTACACCCTGGAAGAACGTAAAATGGCTTTGGCTTAGAAATGGTGAATGAAAAGTATATGTTAATATCCAAGCAGGGCAATTGCTTTGCTCTTTGTTTAGTGAGAAGAGTGAGGAAAAGTGCCTTTGAGAGGGGGAGAGAATACTGGAGCTTTAAAAGACAAGAGAGTCAATGCTGAAGGGAGGGCCAGGGAGGCCAGGGAGCCTGACTCTGTACTTTGATGTCTGATGAGGTCATACGCAGAGTGGTTGTAGAGATGGACCTTAGGTTCCTCAGAAGGCAGGCGAGGAGAATACTGAGAGGAATGGCACCGCTTTGAGCCAGTGGAAGTCAATGACTTATGTCACAGTAGACAATTATAGGTTATAGAGAATAGGGAAGAACAGAAGCCAAGAGAGGGGGTCAGAAGGTCAGAAGACTCCTCAGATCCACACACCATAACCATGAGTAGCGATGGGAGAAACCCTGAGTCACACTGACGACTTTAATGAATGAAGGGAGTGAACAGTAGGACGGAAAACACCTAGAACACTAGTAGGAGTTGCCCCATCTCCTGCTTACGAGGAGATGGCTGTTTGAAAAGGAGGTCTGGAAGCCAAAATCAGAATTAAGCACATGGGTTGAGGAGACAGTTCAATGGGCAAAATGTCTGCAGTGCAGGCTCAGGGACCTGAGTTCTATCCCAAGAGTCCCTGACAAAAGCCCAGTGTGGCAGATGCTTGGATCTCTGGGGAGTAGAGACAGGTAGATCTAGGCTCACTGGTCACCCAGCCTTGATAAACCAGCCAAGCCTGGGTTCTGTCCAGAGACCATGTCTCAGAAAACATGATCATGGTCTAAGGAGCAGTACCTGAGGAAGACCTTGGGCTTTCACCCACATGTGCACTCACACAGGTGCAAATAGAAGAGCTAAGTAGAATTCCATTGACCTTCAAGGCTAGGTTTATAGGAACAAAACAGTCCCTGACTGAGAGAACTACAGGGAAGGCCGTTCTTCAGAGGACTCTGGGGAGTTCCTCAGGAGAGACTAGGGGCATTCATGGAAGTCTCATTCCATAGGTAATCAATCTGGACATCTTGGGTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTTGAGATGTGACAAGAACCAGATTCAGAGACCAAATATCAGAACAAAGATTCTCTGATCACTCTTTTCTCTCAGGAAATTACAAAATATTGCTATCATTTTATCAGTAGCTGGGCAAACATATAATAAATATATATAAATAGATATACACTTTATAAAAGATTTTGTATAATATTTCTCTTACTGTGCCATACTGTATAGTTCAGTTCCTAGGCAGGCTGTTCATAACCTCCTACAACCCCAGTTCAGGAGATCTAGTGCTCTTGGCCCCCAGAGACACATCTGGTCCACATCAAACCCACATAAGGACACAAATATATATAGTGATTAAAAATAAATGTGTCTTTAGAAATAATAAGTAAATGTTTCCATTCTCGATGCCTTACTTGCCATGGAATGCCCTGTGTTAGCCTTCAAACAGCTAGGGTTTGGGGTTTTTTTGTTCTTTGTTTTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTTTTTGTTTGTTAGCCAGACTTTCTCTTTTCTTTTTCTCTTTTCTCTGCAG
Seq C2 exon
TAGACAATATGAAACATCCCTCGAAGGCAGCTTGATCAACCAGGAGATGATGCTAAGGCGACAAGAGGAAGAAATGATGCAGCTGCAAGCCAGGATGGCTCTCAGACAGTCACGGCTGAGCCTGTATCCCGGGGACACCATCAAAACTTCCATGCTTGATATCTCTAGAGATCCACTAAGGGAAATGGCCCTGGAGACAGCCATGACCCAGAGAAAGCTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002061:ENSRNOT00000061162:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.964 A=NA C2=0.387
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]