GgaINT0090274 @ galGal3
Intron Retention
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13310308-13314752:+
Coord C1 exon
chr3:13310308-13310346
Coord A exon
chr3:13310347-13314671
Coord C2 exon
chr3:13314672-13314752
Length
4325 bp
Sequences
Splice sites
5' ss Seq
CGTGTAAGA
5' ss Score
5.04
3' ss Seq
CTTTTGGGGAATACATTCAGGTT
3' ss Score
1.99
Exon sequences
Seq C1 exon
CGCTCTCCTTCCTGTATTCCAGCTAACAAAGGCAGACGT
Seq A exon
GTAAGAGGCTGTCTTACTCTATGTGGCCCTTTATTTTTGCCTGTCGTGTACATGCCTTCGTTTAATGTATGGATCGTCTGCATGTCTTGTACTGCTGCTGCTCTTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGCTTTTTGTTGTTTTACAGCCCTGGACTAAAAGCTTTTGGATAATTTGATTTGGTAATACTTCCATGAGTGGAATATCACTGTAGCTTCGTCTACTTTTTCATTTCAGTGTGAAAGTTCATTATGAGATGTCAAATAAGCAGGATGAGCACATGCCAAATGAGGGCCTGTTTGAAGAGGGTGTGTGTAGGATTATAGGAATTTCCTACAGAAGATAAATTTTGGCATTCAGGAGGCCTATCATAGCAAGTAATTGAAAATAGCACAGAGATAAATAGGAAGAGGGAAACTGAGTGTTGAAGAGGACAGGAAAAATTCATACAACGAAAACAGAGTTGTATGTCTTACAGTCTGTTATGCTGGAAAGCTCTATGATGTTTCAAAAAAAAAAGTGGAATTCGAAACATGGTGTTATCCAAGCTTTGTCAGACTGCTTTGGTACTAGGTATGCTGTGCCCATTTTGAACTCATCTTGCTTCTTTTGATTCTTCTATGTATAGAAGATAATAGGAACAGTAAAGTATAGAAAGCATTTATAATGAATTTTCAATAAACAATGATATCCGCAGCTCCAGTAGTTACCTTACCTATGTAGATCAAAGCATGAATCTCTGTGTTCAGGGCAGGCTTACAGTAACTGCTTGTTTTTGCCCACTGTGGCTCCAATTCACATGTGTTTGCACAGTGGCCAGCTTTGGCTCAGGCCTTCACAGGTGACATTGTGTAGACCACCAAACACAGAGTGGTGGAAGACAACAAGGCTATTACAATTTGATCTGAAATGTTGTTTTCCTAATCTAGTGGCTTAGTTTAAAACTAATTTTTGTGGCATTAATATGATCCACTTAAGTTGAGTTCAGTTGCTTTTGTACTTTCTTCTCCTTAAAGTAAGGAACCTGAAGATTACTGCAGCAATACAGCTTAGGGCTCTGTTTCTACAGTGAAGTTGGTGGTTAAATTCCCTTCAAATTCTGTAATGGTAGATCAGGTTCTGTCTGTTTTGTGGGCTTTTTATGTTCATAAGCAAAGTAAAAATAGGTTTGTAACTAGTTCAGCAGTTGTTTTTGCACCACAAAGGCTTTGTAGGACATTCCAGAACAATTCCATCATTTATATTATCCTTGTACCAAATAGACACCATGAAAATTCTTTGGTATGCAGATGCTACTTTGAAGGGAGAACCTTCTGAGTATGTGGAAATGTTTATGCAATTATAGATAAGATCTTTGGGCTTAACTTACAGAAGACAAGGAACATCTGCTTCTTGCTATGAAAAATTTTCCTGTGGTTACCCATTGGGTTTATTTTTTAAATAAGGCTGTTAAGTAGCAGCTAGATTTTTTGACGTTAAACAGTCTTCAAGTGCATGTCACGTTATCACATATTTAGGCTATATTTATTAAAAATAAGTTTAAAGTACTTAAAACAACTCAATGTCTCTGGGGATTTACACCTGTAAGGTGTAAGTGCTTCTGGGTAAAGCTTCCAATTGTAATTTGCTTCAGATAAATCTGAGTTCAGAATGTTTGCTTTACTGCTATTTTTTGCCTCAGTGCTTGGAATACATGATCTGTGTGTAGAAAACAGGTGTATTGCATGGTGAGAAAATCTGTTCTTATTACAGAAAGATGCATCTTAGTATGCCTATGTTGATTAAGCTGATGAGCCTTTTTTTTTTTTTTTTGAAGACTATGACAAAAAAGCCATTAAACTTAACTCACTACAATTGAAAACTAAACAAACAAAAAAAAGCGAACAAACAACAAGAGAGCTTCATCTGCACTTGTTCACTGCCATGACTAAATTTCCAGAGAACAGTATTTGCATGTATAGGATTGGCTTGCCATTTTGTTTTATACCCAAAAAGCAGTAAAGTTTGTGGAATTCCTATTGTGATGTCAATGACAAATGAGGAAAAAAAAATTGGAATATTCAAATATATTCTGTAAAAGTTGCTGCAGATTTTGTGTGCAAGGTAGCCAAATCCTTAGCAGTGAGGAACAGTTAATAATGTTGCTCCAGAAAAGCGCAACATGTAGTGTAGCCATCTGTAGGCCTCCAGCTTTTACTTTTATTAGTAGGAGAGAAAAGCATCCTCATCTCACTTAAATCTTAAAATTGAAATCAACAAAGAAAACTTTGATGTGGAGATGTCATATTTTCGATGAGGAATTTTCCGTTCTCTTGAAGATGACTTGTTATATAGGACATCAAATCATACCCACACGAAGGCTGCTCCAAAAGTAATGTCTCCTATTTTATTATGTTGGCCCACCACATCAGAGGCAGATGTTGGTGGGATGGCAGCTGAGGTTGAACCTTCCCACCAATATTCCATTACATTTTGTTGCTGTGCAACAGATGGCAGCAGAGGGGCAGTGTGACAAATCAGCATCTGACATGGAAGTGTGCATGGAGCAAAGGGGTGTCCTTGAATTCCACCGTGCAGAAAAAATGGCACCCATTGACATTCATCAATGCTTGCTGAATGCTTATGGAAACCCAACAATGGATGTGAGCACGGTGAGGCTGTGGGTGGTGGCGGCAGTGGCAGTAGAAGTCACCTCTGCCAGTGCAGATTTTTAAAAGCATGGCATGCAGAGTCTTGTGCATTGCTGGTAAAAATGCAGAGCTGATGGTGGTGACTGCTGAAAAAGGGTCTTTTGTAGCTGAGCATTTGCTCTGTCAAATAGTATTATTATACTCTTTGTATCTGTTGTGGCTTCCATGGAAATAAATAGGAGGCATTACTTTCAGAGGAAGGTGCATACTATGTTGTCCAGTATAATTCTGTGTTTGGCTTAGTTTCATTTTATATCAAAGTCTAGGAAAACAGCCCGTTGAAAAAACTATATTCCTAATTAAGTTATTTTCCTTTTTGGTAGTTCAGATGGAGTGCAAAAAACCTCAATTTCCTGTGAAGCGCTGATTTAAGGAGATGCATTATTTGCTTTACTTTTTCTCCTAGTTTTATTCTAAATACAGTTGCAGTGATTTTCATAGGCTATATGGGAATTCACTCCTAACAGATCTCTCGTACTGACTGACAAAAAAAAAAAAAAGCAAACAGTTGCAATTAGGAAATATTCACCCTTTAAAAGTGCTGAATTGCAAATCTCCTTGAGTATTGATCAGGCCCTTCAACTAGCAGTTCTTATGCATGTGCTCACCTCTCATCCAAAACCATAATGTATCCATAGTTAGTAATTTTTGTTGTGATTTTGTAACTTGATTAAGAAGTTGCTTAAAACTGAATTTTTCTTTCTCAGTTCTCTCTTAGGAATTCTACTGCTTCCTTATCTTATTTTGGTAAGAGTCAAGAATTCTATTTTAGTGATGTATTTGATTTATTTTTTGGTTGTTTTTTTTTCCCCCTCTGGAATTATTCTCCTAGATTGATTCAGTTGAGAACTTTACATTATCCAATACACCATCACGGGATGAAGATACCAAGTCTCACCTCCATTCAAGATCAAGATCTCCTTCTACGGCTAGTGAAATTGAACCAATCGAGGTACTGGGAGTTGACTTTTTTTTTTTTTTTTTTTTTTCCCTTAAGGAGTACTTGTATAAAAATTGCTCTAGCAAGTCTTTTTGTTTAGAACTAAACTTATCATTCTGCAGAGACTGTTTAGGACCTTGTACATAGCCTTCTGTATGAGCAGTGAGCTGTATTTAGGGGACCTTTTACATCTGGTTAGTTGATTAAGGATGGGGACTATGTGAAATCAGTTACTAAATACAATCTGTCTTCATAATGTATTCTTAGCTATGAATACCTTAAAATATCTGTGCAAAGTTAATGTCATATTGCACTTCGTAAGAGCATGTTGTGGAGCCTTGCTGAAAGTCTTAGCAATACAGAATCTTGGCAAGTCTCCACAACTGTAATAAAGTATCCCCATTCCCTCTTAAAATATTAAATTCACTGATTATTTTGTGTTTGAAAATAATCCAAAGGATATTACGCAAAAGAATTGTAGACATTTAAGAAATGAAAATCACACATCTTTTTTATGACAAATAAGATCTGTATTCCTGCGTCCATCCTTTGTTAGTCAGTTTGGTTTCTTTGCTTGTGTATCTAGGGATGGAGTGGATGGCAGATTGTAATCTTTTTATTTTATTCATGCAGTCATTGATAGTATGTATTTGATGTCATTTTGATCTTTTGGGGAATACATTCAG
Seq C2 exon
GTTACGGATCATCCTCCTCGATCAATTCACACACCAACCATGCGGACTGCGTATATTGGATCGGGACTCTCTGCACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158:ENSGALT00000014921:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.513 A=NA C2=0.815
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]