GgaINT0090274 @ galGal4
Intron Retention
Gene
ENSGALG00000009158 | CDC42BPA
Description
serine/threonine-protein kinase MRCK alpha [Source:RefSeq peptide;Acc:NP_001186372]
Coordinates
chr3:11764341-11765215:+
Coord C1 exon
chr3:11764341-11764460
Coord A exon
chr3:11764461-11765134
Coord C2 exon
chr3:11765135-11765215
Length
674 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
CTTTTGGGGAATACATTCAGGTT
3' ss Score
1.99
Exon sequences
Seq C1 exon
ATTGATTCAGTTGAGAACTTTACATTATCCAATACACCATCACGGGATGAAGATACCAAGTCTCACCTCCATTCAAGATCAAGATCTCCTTCTACGGCTAGTGAAATTGAACCAATCGAG
Seq A exon
GTACTGGGAGTTGACTTTTTTTTTTTTTTTTTTTTTTCCCTTAAGGAGTACTTGTATAAAAATTGCTCTAGCAAGTCTTTTTGTTTAGAACTAAACTTATCATTCTGCAGAGACTGTTTAGGACCTTGTACATAGCCTTCTGTATGAGCAGTGAGCTGTATTTAGGGGACCTTTTACATCTGGTTAGTTGATTAAGGATGGGGACTATGTGAAATCAGTTACTAAATACAATCTGTCTTCATAATGTATTCTTAGCTATGAATACCTTAAAATATCTGTGCAAAGTTAATGTCATATTGCACTTCGTAAGAGCATGTTGTGGAGCCTTGCTGAAAGTCTTAGCAATACAGAATCTTGGCAAGTCTCCACAACTGTAATAAAGTATCCCCATTCCCTCTTAAAATATTAAATTCACTGATTATTTTGTGTTTGAAAATAATCCAAAGGATATTACGCAAAAGAATTGTAGACATTTAAGAAATGAAAATCACACATCTTTTTTATGACAAATAAGATCTGTATTCCTGCGTCCATCCTTTGTTAGTCAGTTTGGTTTCTTTGCTTGTGTATCTAGGGATGGAGTGGATGGCAGATTGTAATCTTTTTATTTTATTCATGCAGTCATTGATAGTATGTATTTGATGTCATTTTGATCTTTTGGGGAATACATTCAG
Seq C2 exon
GTTACGGATCATCCTCCTCGATCAATTCACACACCAACCATGCGGACTGCGTATATTGGATCGGGACTCTCTGCACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158:ENSGALT00000039364:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.850 A=NA C2=0.802
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACATTATCCAATACACCATCACGG
R:
CTTTGGTGCAGAGAGTCCCGA
Band lengths:
182-856
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]