GgaINT0096248 @ galGal4
Intron Retention
Gene
ENSGALG00000016037 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr2:128193925-128197175:+
Coord C1 exon
chr2:128193925-128194024
Coord A exon
chr2:128194025-128197022
Coord C2 exon
chr2:128197023-128197175
Length
2998 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
CTCTTCTGGTTTTTTTCCAGAGC
3' ss Score
9.97
Exon sequences
Seq C1 exon
GAGAACGAAGTCCAGATGATTTAAGTATCTTGTACTCAAACAGAGCAGCGTGTTACTTAAAAGAAGGCAACTGCAGTGACTGTGTTCAAGATTGTAACAG
Seq A exon
GTAAATTGCAACCTTCTGTGTAGAGCAACAACATTCCTGATGATGATTAAACATTTTATGTGATATCTTATTACTGTACTTTGAATCCCTGTATAATCTGACAGACGCCTTTATTTGTCAGTTACATAAACAATCATGTGAAACTTAGGGAAGGAATAACATTTAACTGACTTAGAAGGCTTCTTGTATACACAAGTATGGGTGGAAGATTTACAAGTTTTATTATAAGAGCAGGCTTACTTCAGTAATACTCACTCGTAACCTCAATGTGCAATCTTTATTAATCCATAATGCTTATCATAGTGTTGGAAATTACTTTCAAGCATTTGTGAGGTTCACGTGTCTGCTCTGTTTCTGTGGTGGTGTTATTTTTAAAATATATATTCAGCTTAGCTACGAACAATGATTACAGTTAAGAAACTGAGCTAAAATCCTTCCTGCTTATTATGGCTTTTAAGGATACGGGAGTGAGAGAAGATCAGACGCCTTCAGTAACTCGCAAACACTGCCTTCAACTAAATTATTAGTGTATTTCCAGATGTCTTTTGTTATATTTTCTTAAAAGGGTTAGTAAGACCAAGGCTTAAATGGCCAAGAGTATCTCAAGATGTTTGGGATACTTTAGGTTTTTTGTTTTGGTTGGTTGGTTGGTTGGTTGTTTTTTACATAGTAGTACCCAACTATTAAAAAAGCCACTCTAAATCTATGTGTATGTAATGTAATTAACTGAGTATTTGACATACTGCATAAATTCTGCCTGACAAAAAAAGTTTTGTAGAAATTTCATCTGAAAAAATTGACTTATTAACCACATTTGTTAAAGGAGATGTAGGATCATAGACAGCTGTCTCACTAAACAAGATGGCATACTTAACAGCCAACAGATAATTCAGGAGTTTTCTATTATAGAAGAGTTCAGTCAAAATCAGTAATGCAATGACTTTGGTTTTTATATTCTTACCGACTGAAAGCTTATTTTCTCATTATTTTATCACGGTGTTCTTAATCTTGTGCATATTCAAGAACAAGTGATGCTTACTAAGCATAACGGAGGTGGAAGTAATGTATAATCTGGGGTGCAGAACAGCCAAACTACAGAAAGTAGGCAACGTCAGTTAAATTTACTCTAGGCAATACAATATAAGGGATGATTTCCAAATAAGTTGCTTGATTTAATCAAGTAAAACTTGACGTAGTGCTTATGTTTGTGACATTAAAAGTATATGGATGTATTGAACATCTATTAAGTTTTATCTGTGCAAGGCTTAAAGATTTATGAAAAGCCATCTGTTGGGTTACTGTTTGTCTCAAGTCTCTGATTTGGATATTTCTTGTTATTGTGAGTGAAACAAGGCTCCTACACTAACTTCATTTTCCCTAATTTAATCTGGTGGTATGGCTTGTTTCATCGATGTATTATCTTTACATTCTGCCCTGGGAAGAGAGTTTTCCTACTGAAGTTTTTTTCAAGTAATGTCTTCCACTCCAAATAATAATAGTGGGGTTTTTTTGTCATTCTGAATACTAGGAGCCTGAATATTGTATTAGTTTTTGCCTGAGTTACAGAATGTGGAGCATTTTTGCAAAGTCTTTTTAAGAGCTGTGACATCATATGTTTTTGTATTTTTCAAATGCATTCATTAGGGTAAGGAGAGTTGGAGTGTTGGTATGCTTATGAAATAGAAATTGGAAATCTTTGTTCCAGAGATGGCTGTTTCTCTAGCTTTATGGAGGAGTGATGGTGAAAAACTAACTTAACAGCCAGGAAGAGGAATAACATCCTGGGCCATACAGAGAGGGACATAGCCTGTGGATTAAGGGAAGTGATTATCCCCCCATACTCAGCACTTGTTAGACAACAGCTATGCTATGTTATTGCGTTGGATTTTGGTTTCCCTAGTACAAGAAAGGTATTGGTCAACTAGAATGAGTTGAGTGAAGTGTTGCCGAGGGGGCTGTGGGCTTTGGAACGCACGCCTGGAGGAGTTGGGTTTGCTCAGCTTGAGGAATGGCTTCGAGGGCTCCTAGCTGCAGGCAGCCAGGACCGATGAGGAGATCACCCAGAAGATGGAACCTGACTCTGGCAGTGTATTGTAGGAGGATAAGTGACAGTAGGCAAAAACAAACCCAAGACTGTACATTAGAAGAAAAAAAACATTTCCCAATGGAGGACAGTAGGGTGTTGTGACAGGCTGCCTAGGGTGGTTGTGCAGAAATTTCCCTGGAGGTTTTCAAAGCCTGACTGGATAAAGCTTTGAGCGACCTCTGTCTGATCTCAGAGCTGACTCCACATTTAGCAGAAGGTCAGACAAGAGACCTCTGAGTCTGAATTAGCTCATGATTCCATGACATCTAATTGTCTAGACTCACACTAATTTAAGTATTTTGATGTTTATCTTTTTGTCTTATTAGCAAGAATCAGTGATTAGTAAGAGGTAATATTTAATAGATAAAGCTTTTGTGGCTTCATGAAGTTACTGGCAAAGCACTTGATGTTCAGAAGTTCTGATTACACAGTATCAGGGATTGAGGCACAAACGAACAAAAGACAGGTAAAAACCTAAAAGGCAAACGTAGACAGGGATATATTCATGTTTCATTAAATATATTTTTACATGAATATTTTCAAATAAGGAAGAAGAATTAAAAGTTGTGTAGGCAAAAGCACAATATACTTGAAATTCATGTAGGTCTAGGCATGACTTGAGAAAAATAACTTTTAACAACTGTCATTTTGTTACTCTAATCACCAGGAAAGGATTCGTTCTGCAGATGGAAGATGTTGGATGGCAAAAGCACTAACGATTTCTTAACTGCATTTCATTTAGGGCATTAATAATAAACCACTCAACAGTGTCTTCCTGGGTTATGTTACTGTAAGACAAATCTGAAATCACACAGTTGTTCCATATGGTTGTATATATAATAAAATAGTTGTACTGCTATCATTTACTTTTTTCTGCTTTAACGTTATATATCTCTTCTGGTTTTTTTCCAG
Seq C2 exon
AGCTCTGGAGCTTCAGCCATTTTCCCTTAAGCCTCTTCTACGACGAGCAATGGCATATGAGTCTATGGAGCGGTATCGACAGGCATATGTTGATTACAAAACAGTCCTACAAATAGACAGCAGCATACAAGTAGCAAATGACAGTGTTAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016037:ENSGALT00000025838:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(43.4=100)
A:
NA
C2:
PF134141=TPR_11=PD(7.9=11.5),PF0051523=TPR_1=WD(100=61.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]