RnoINT0141947 @ rn6
Intron Retention
Gene
ENSRNOG00000010078 | Spag1
Description
sperm associated antigen 1 [Source:RGD Symbol;Acc:1310702]
Coordinates
chr7:75035427-75040493:+
Coord C1 exon
chr7:75035427-75035526
Coord A exon
chr7:75035527-75040340
Coord C2 exon
chr7:75040341-75040493
Length
4814 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
3' ss Seq
GTGATATCTTGTCCTCTTAGGGC
3' ss Score
9.63
Exon sequences
Seq C1 exon
GAAGTGAAAATGCGGATGAGCTAAGCATCTTGTATTCAAATAGAGCGGCGTGCTACCTCAAAGAAGGAAACTGCAGGGGCTGCATCCAGGACTGTGACAG
Seq A exon
GTAAACCTGCTCCAGGTTTGTCGAGAGACAGTTGTAACGGCCATGTGAAGAGGGCAATGTTTAATATCCCAAGTTTTCTATGTAAGAGCCTCGCTTCCTAAGACTGGTCATAAGGTGTGAGGAGAATGTAAAAAATCCCCCCTCCACACACATACACACACACATACACACTCATACACACATACACACATACACACACATACACACACACATACACACATACACACACACACATACACACACACACATACACACATGCACACATACACACACATACACACACACATACACACACACTACTGAAAATTATATAAACTTTTTCTCTCCCCTTCTCCTGCCACAATCTGTGCCTTTCCTTCTCTTGGATTATGGGAGATAACTTGCTCCTGGCCACTTGCCGCCAGGGTAACTTCTACTGGATTTTGCTCAGATTGTCTCCAGCAAGTATTCAGTGGCTCAGTATTGCCCTCCAGATCAACTTCCTTGGCACCACCTGCTCCCCAAACTGGACCACTTCCTTCCTCCCACCGCCCTGTGTTCAAGGCCTTTTCCCACCTTATTCTACGTAAGGGTCATACACTCAGCTCTGCTCAGCGGCTGGCCTACATGGTGGGTTTCTCCAGGCGCCCTGGTCATCGGCAGGCTCTAACACTGGTCCTGACCCTGTAGACTCCCAGTCTCTTGGCCTCTGTCGCCCCTTGCTCATAAATGGTACTCAGTAACCTGCAAGGCTGATGGATATAGGCACATGAATCAAACATTTTGTTTTCTTTTACCATTAAGTGATAAACCCTTAGGCAAGAAGTTACTATTTAGCACATCTGAAAACAATAAGAAGTGATGCTCTAGACCGACTGACACAGGGCCTGGTTTCCTCCTGCTGCTTCATATAATTAGAGTGTGTCACGCCTTTCCCTCTCAGAAGTTTGGACAGTAAATTTATGAGCCGCGTTTACAAGGCAAACAGTTGCCTTCATTTACTTGGTCACTTTATTGGTTGGACTTAGCTTGGTCTGTTCTTCCAGTGTCTAACGCAGCTTTACACTGCTCGGTCGTGTCGTTTTGTTTTGTCACTATTACAGGTTGGTTTAATAGCCCAGCATTTGTATTTTGGTTTGGCCTGTCTCCGTCCACAGTTATACTGGCTCCCATTAGCTCGTTACTACGTTTTTAGGGTTTTATGAGCTAATGGACATCAGGTGAGCAGCTTGAAGTCCATCGGTCGTGGCCTGAGAACCTCTACTGTACTCACGGTCAGTTGTTGTGACTGGCGGTGAGCGTCCTCTCATCCAAGCGCTCCCTTCTAACGTGCTTCCTAAGAGGACCCTGAGAGGGGACCAGGCCTGTGTCAGGGGGCCGGGATAGGAGGAATGAGTCCTGGGGGAGAGCAGAGGACCTGCTGGGAAGGGAGGAGGGCCTTAGCTTAGAGTTGTTCTCAGCCAAGGAATGTGGTTCTGCTAGTCAAGGCTGACCTCTGTGTAGGCTGACCTAGTTAGGTGTCTTCTTCGATACCTGGTGAGAGTCCCAGCAGGGTGCCTTGGAGATGGTACCTAGTGGGATGCTTTTATTCTCAGATTATTTATTTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTCATCCATTCAGTCAGTCAACTTACATCCTAGTCTCAGCCTTGCTCCTCTAAGTCCCCCTCACACGGCCTCCTCCGCCATTATCCTATCCCCTTCTATGGGAAGGGGGAGGTCCCCCCTGGGTACCAACCCACTCTGGCATCTGAAGTCTCTACAGGACTGGCACACCCTCTCCCACTGAGACCAGACAGACAGCCCAGTTAGGACGGGACCCACAGGCAGGTAAGAGTCAGGGTAAAGCCCCGCTCCATTGTTGGGGACCTGCATGAAGACCACACTGCACACCGGCTACATATGTGTGTCTGGGGAGGGTGGGGCCAGGTCCAGCCCTTGTGTGCTCTTTGGTTAGTGGTTCAGTCTCTGGGCGCCCCCAGTGGTCCAGGTGGTTGAGTCTGCTGGTTTTTCTCTAGAGTCCTGGACCCCTCCAGGTTTAATGCCAGAGAAGACATACATGATGTACCTTCAGACATGGTCAAAGATGGATGTATTTCAGTCTGAACAAGGAATAATTTATTAGTAAGATGTGTGACTATCCCTTTTAGCTCCAAAGACTGCACACATGTTTGAAGAGGTTTCCTATTTAATTTTCAGAAATAATCTTTGCTTTCTGGGGGTTCCATGAATTCTTATTACTGATAAGTAGTATTATAAGTCAAACTTTGAAAGAGATGCCAGGGGTCATGCCTCACACCTGTAATCCCAGCAATTGGGAGATGGAGACAGCAGGATTAGGAGCTGTAGGATATCCTAAGCTACAGAGTTTGAGGCCAGCCTGGGCTACATTAAACCCTGACTCAAAAACAAACAACAACAAAAACCCAGACATTTTAAACTAGAGAAACCTTTTAACCTGTGAAGATATTGTTTATAGGATTTAATTTTTTAAGGAACATTTTAAATTATGTGTGTGCATGTGTATGCCACATGTGTGAGTGCCTGAGGAGTTATAGGTGGTTGTGAGTTGCCTTACGTGGGTGCTGAGAATCGAACTCAGGTCCTCTGGAAAGGCAGTGCATGCTCTTAATAGCTAAGCCATAACTCCAGCCCAAGATCTAAAAGCTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTATGTGGTATGGTGTCTGTGTGTGTGTGTGTGTGGTATGGTTTGGTGTGTGTATCTGTGTGTGTGTGTGTGGTGTGTGTGTGTGTGTGTGGTGTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTGTAGTACCCAAGGTGGCCAGAAGAAGGTATCAGATCCCCTGGAACTGGGGTAAAGGACAGTCGTGAAGCCTTCCTATGTGGGGCTAGGAACTCTGGTCCTCTACAAGAACAGCTGTTGGTTTTTACTGCTGACCAACTCTCCAACCTGAAGATAAATGTTTCTGCATCTTTGGAGAGGCATTGTTTCCCAGAGGGTTCTTTCCAGAACCATTCTTGGGAATTTTGGTGGGACACATGAGGCTCTGGGCCCCTCCCTCCTCAGTTTCTCCACGATTTAGTTTGCAGGCTGTTGCCCCTAAGCAAAAATGTGAGAAACAGTGTCCTAAAAAGGTTTTTGTTTATGCATAATTCTTTATCAGCAAAAAAACCAAACCAAAACAAAAAACCCAAACCACATCATACTTCTGTTTGTCAGAGGATTCTTGAAGTTATTGGAAACATGTGTACTCACACGAATGTGCACACACCTCTGGACAGCTTCCTTGTTCAGAATATCTAGCTAGGCTGAGGCTGACTAGTCACTCTCCGCCGCGGCTGGCTTTTGCTGCCTTCTGACAGACTCGCCCACTGACCTGAGCAGCCAGCCTCCAGGCGAGCTGTGTTTTCATATTCGCCACACCTGTCTGTGGTTGTGGTTGGAGATGGTTTTCTTCAACAGCATTTCCATTCATAACCTCACACTCATTTTCAAGATGTGGTCAAGGAAGGAAAAACCTGGTCTTCATTTCCTATGTTAGGAAGTACTAAGAGTTTTGTGTCCCAGTCTATCATTTTGAGATTCCCAGCTTGGGCCATCTTGACTGGTTCTGTGGTATCTTGAGCAATGAAAGCTGGAATGGAGGCGGCACGGGTGTGGCAGGGACACCTCCACTCTCTGCACTCACAGATGAAGTTATCTTTAGGGATACTGAAAGGGCTTTGTAGATTAGACAGTGCAAGATGAAAACTCGTGACTAGTAAACAGCTGTAGGCTTAGCCCCTGATTCTCCTCTGCTGTGTTACAGATTCCCTTTTTATAGTCAATAATGGCCCACAGAAAGGGTTAGAAAGCTGATACAGAAAACACCATGCAAGCTCTTGTGGTTTAGTAGTAAGGCACCTTGTTAAATATATGGATGTGATTAAGAAGTGTGAGTGTGTGTGCATGTGTGTGCTCTGTGTGCACATGTGTGCTGTGCGTGCATGTATATAGACCAGGGGTCAGCCTGCAGTGTCCTCCACAACAGCCACTCCCCATTTTATTGTGTAAGACAAAGTCACTCCCTGTGCTTGGAACTGCCTGCTTAAGAACTCTCTCAGACTGGCTGGTTAGAGAGCCCTAGCAAGTCCGTCTTCACCTCTTAAGCTCTGGGAGAGCAGGCAGGTGTGGTTGGTTTTACAAGGTGCGGGAATCTTGGTTAGATTTCCTTAGCTGTGAGACTTTTTTTTTTTTTTTTTTTTTTTTTTGATATGAGTACACTGTAGCTGTCTTCAGACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTAATTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGAGTCAGTGCTTGTAACCACTGAGCCACCTCTCCAACCCAGCTGCAAGACTTTTATTTCTAATCTGTCCACAAGAGTCTAGATGCTTGCTCTGGGTCTTGGGCCATCTTGGCTCTGTTGGGCAGGGGAAATGGGGGGGGGGGGAGGATGCTGATGTAGTACTGGGGAGCTCACACCTCCTTGTGGCCCGAGGACAGCAGAGTGATTTCTGGTCAGTGGGTTCAAGGACAGTGGCTGGCTGTTTAACACTAGGTTTGTTTCTGATAGAAATCGGGTGTGATGCATGGGGGTCCAACACTGCAGTCTGCATTGCTAAATATAAATTAAAGGATCCTTCTCCTGGTAAGTGACAGTGATATCTTGTCCTCTTAG
Seq C2 exon
GGCTCTGGAACTTCAGCCGTTCGCAGTGAAGCCTCTTTTACGGCGAGCGATGGCCTATGAGACTTTAGAGCAGTACAGGAGCGCGTATGTGGACTATATAACAGTGCTGAAGATAGACTGTAGGATCCAGCTGGCCAGCGACAGCGTTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010078:ENSRNOT00000013801:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.049 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=FE(43.4=100)
A:
NA
C2:
PF134141=TPR_11=PD(7.9=11.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]