GgaINT0096742 @ galGal3
Intron Retention
Gene
ENSGALG00000012954 | MYO10
Description
NA
Coordinates
chr2:77317732-77319042:+
Coord C1 exon
chr2:77317732-77317838
Coord A exon
chr2:77317839-77318837
Coord C2 exon
chr2:77318838-77319042
Length
999 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
3' ss Seq
TTTTTTTTTTTTTTTTCCAGAAA
3' ss Score
11.47
Exon sequences
Seq C1 exon
GTTTTTCTCCGGGAGTCCTTGGAACACAAGTTAGAGAAGCAGCGAGAGGTGGAAGTCACCAAGGCAGCAATGATTATCCGAGCACACATCTTAGGTTACGCAGCCCG
Seq A exon
GTAGGTGACTGGATGGGAATGTCAGTAATTAAGCTTTTGTATAGATGGGTGAGTGTCAGGTAGTAAAATTCCTTGGTCACAGTTTTTCACTTTTCATAGGAACCAGGCATCCAAATCCTGTTAGTGGCTTTTGAAAATAACGCCTGATATCCTTAGCAGACTCATGAATTTAAAAAAATGGAGTTAGAATTATTTTGGTGTAATGAATAGGGCAGTATGGAAGACTGGACGTCAGCCACCCTTGTAATAGTATCTTGGTACGAAATAAGTGGTAGAAAATCTAGCAGGATGGTACCTAATGGGGCTGCCCCCAAATCATGCATATTTATCTTTGCTTTTTCATGATAAGAGGGAGCAAATATAACTAGTCAGTTTGGTTCTTTAAGAACTAAACGTTAGGTAAGTGATTAATGTTTCATTTGTTTACTCAGCTTCTTGCATTATGTATTAGGTGTAGTTTCTCATCCCATCTGTTTATTTCTCTGCTTTTTCAACATATCAGCTGAGGACAGTTTGAGAAAACTTGTTTGCATAATGTAGTCTTCTCCTTATATTCTGACTAATATGTTACTCAAAAACTATATTCATTTTTAATGACAGAGCTACCTGTGCATAATCTTTCTTTTCAGAGATGTTGGATAGATACCTGTGAGTATTTTCTCCGCATGCATGCAAGCATACAAGCTGTACCTGGTAGCATTTTCTTGTCAAGGTCACAAGAACATGTAAGACAGGTAGTGTGCATTTCCTTAATGAAAATACAGATTGCTCTGTCATGGAAATGACAGATTCTCTTCCCTTTCCTGGGGAAGAGAGTGTGAATTAGAATGGGGAAACCACCACAGAGACAGAAAAAATAAACTGCTTCACTACCATGCCTCATTATTGCAGGTCACTATGGTAGGACTTCTCACGACTGCTCATTGATCCTTTGTTTCCTTATAAATTTACTTTATTTTGTGATGTTTTTGTCCTTTTTTTTTTTTTTTTTTTTTCCAG
Seq C2 exon
AAAGAGGTATAGAAAGGTTCTATACTATGTGGTTGTGATACAGAAGAACTACAGAGCATTCTCGAGTAGGAGAAGGTTCCTTTGCCTGAAGAAGGCAGCCATAGTTCTTCAGAAGCAGCGTCGAGGCCAGATTGCTCGACGTGTTTTCAGGGAAAGACTAGAGGAGAAGCGGAGACAAGAGGAAGAAAGAAGAAAAGAGGAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954:ENSGALT00000021128:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.087
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.5=8.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTCCGGGAGTCCTTGGA
R:
TTCTTCCTCTTTTCTTCTTTCTTCCT
Band lengths:
310-1309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]