MmuINT0103874 @ mm9
Intron Retention
Gene
ENSMUSG00000022272 | Myo10
Description
myosin X [Source:MGI Symbol;Acc:MGI:107716]
Coordinates
chr15:25707836-25709565:+
Coord C1 exon
chr15:25707836-25707942
Coord A exon
chr15:25707943-25709337
Coord C2 exon
chr15:25709338-25709565
Length
1395 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
CTGGCCGCTCTCTCTTGCAGAAA
3' ss Score
12.09
Exon sequences
Seq C1 exon
GTCTTCCTTCGAGAATCCTTGGAGCAGAAACTGGAAAAGAGGCGGGAAGAGGAGATTGACCGTGCGGCCATGGTGATCCGAGCTCACATCTTAGGCTACTTGGCACG
Seq A exon
GTAAGAAGCACACCTGGGGAGGGACACGAAGCTCTAGGAGGGCTGTGACCCCCAGTAGGGTGGTTTGTGGGAATGCAGAGGTCCCCAAGGTCAGATCTCTGTAAGTGACCCCAGCAGTTGCCCTGTAAGCCTCACCTGGACAGAATGTCCACTTAGCAGTTACACGAGACACTTAGGCTGCTGCATGGGCTCCACCAAAGCCTCTGGGGTGCAGCTCTGTCCTGTGACGTTGCTACCTGAGTGTATCTCTTGTCTTAAACACTGGGGCTCATGAGGATTTCAGGTTCTGGAGTTTTTCATATTGGAATCTCTTATCTGCCTGGCCTCTCCTGATTGGCAGTCAGAAATTCAAAAGTACCCCAAGATCTGAATTTTTTTCTGTACTGAACATTGATTTCTCCTACCCCAGTACTTGTTCATACATCCTATATCCTACACATAAGTTCTACCTCCTACCTGCATCCCTAGCCCAGGAATCTGAATGAAGATCTACTTCATTTTATATTTATGAGTGTTTTGTCTTATGTATCTACTTCCTATTACCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGCGTGTTTGATAGCTATGTGGGTGCTAGGAATTGAACCCTGGTCCTCTGGAAGAGGAACCTATGCCCTTAACTGCTGAGCCATTCCCTCTAGACTCTGAACATTTGTAAGCATCATCTCAGCATTCAAGAAATTGCAGATTTGAGGTTTGGGGATGAAGGATCCACAGCCCATATCACTGTCTAGAGACCCATTCCCTAGCTGCTTAAAAAATGATACCGCATCTTTCGTGGTTGCTTGTGATAAAAATCTCACTATGTAGCTAGGCCTGGCCGGCTTGGAACTCACAGTGTAGGTCAAGTTGGTCTCAAACTCAGAGACCTCTGCCTGTGCCTCCCAGGTGCTGAGACTAAAGAAATGTGCTACCAACTCGGACTCGTGGTCAGTTGGTTGGCTGTACTCTGCAGACCACGTAAAATGCCAGGCATTCCATTCTCCTGAAACATGGGGCTGTCCTGCTGCCCCATGTGTTTTGCTTCCTTGGCGTTTGTATGAACATATCAGGTCCTCTTTGGCTGCGTTTATCCAGCTTATGCCACACTGGGTAAACACTAAATTAGTATTAGTAATTAGTAAATTACTTTTTATTTAGCCAGGATAATGATTGCATTCTGACTTTCTTTTGTTTGGTATTATTCTTTTGTTTAGGCCCAAGTCTCCTCCTCTGCCAGTCTCCATAATAAGAGACCGGGTCCAAGTCTGGATCCTCTCCTTTTTGTCTTAATTGTTGGGTCCTCTTCTTTTGTCTTATAGTCCTGTTGTAAGCTCATTTGACTGGCTCACAGCCTCAATGCCTTGCTGGCCGCTCTCTCTTGCAG
Seq C2 exon
AAAGCAATATAGAAAGGTCCTCTGTGGTGTGGTGACCATACAGAAGAATTACAGAGCTTTCCTTGCGAGGAAGAAATTTTTGCACCTGAAAAAGGCAGCCATCGTGTTCCAGAAGCAACTGCGAGGACAGCTGGCACGCAGGGTTTACAGGCAGCTGTTGGCTGAGAAACGGGAGCTGGAGGAAAAGAAGAGGCGGGAGGAAGAGAAGAAGAGAGAGGAAGAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022272-Myo10:NM_019472:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.169
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(3.5=8.3),PF0061222=IQ=PU(76.2=44.4),PF060886=TLP-20=PU(11.2=38.9)
A:
NA
C2:
PF0006316=Myosin_head=PD(7.2=7.8),PF0061222=IQ=PD(19.0=5.2),PF0061222=IQ=WD(100=26.0),PF0061222=IQ=WD(100=27.3),PF117163=MDMPI_N=PU(50.0=64.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTCCTTCGAGAATCCTTGGA
R:
TTTCCTCTTCCTCTCTCTTCTTCTCT
Band lengths:
334-1729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: