GgaINT1018602 @ galGal4
Intron Retention
Gene
ENSGALG00000012954 | MYO10
Description
myosin X [Source:HGNC Symbol;Acc:HGNC:7593]
Coordinates
chr2:75607786-75609101:+
Coord C1 exon
chr2:75607786-75607892
Coord A exon
chr2:75607893-75608891
Coord C2 exon
chr2:75608892-75609101
Length
999 bp
Sequences
Splice sites
5' ss Seq
CCGGTAGGT
5' ss Score
9.39
3' ss Seq
TTTTTTTTTTTTTTTTCCAAAAA
3' ss Score
2.72
Exon sequences
Seq C1 exon
GTTTTTCTCCGGGAGTCCTTGGAACACAAGTTAGAGAAGCAGCGAGAGGTGGAAGTCACCAAGGCAGCAATGATTATCCGAGCACACATCTTAGGTTACGCAGCCCG
Seq A exon
GTAGGTGACTGGATGGGAATGTCAGTAATTAAGCTTTTGTATAGATGGGTGAGTGTCAGGTAGTAAAATTCCTTGGTCACAGTTTTTCACTTTTCATAGGAACCAGGCATCCAAATCCTGTTAGTGGCTTTTGAAAATAACGCCTGATATCCTTAGCAGACTCATGAATTTAAAAAAATGGAGTTAGAATTATTTTGGTGTAATGAATAGGGCAGTATGGAAGACTGGACGTCAGCCACCCTTGTAATAGTATCTTGGTACGAAATAAGTGGTAGAAAATCTAGCAGGATGGTACCTAATGGGGCTGCCCCCAAATCATGCATATTTATCTTTGCTTTTTCATGATAAGAGGGAGCAAATATAACTAGTCAGTTTGGTTCTTTAAGAACTAAACGTTAGGTAAGTGATTAATGTTTCATTTGTTTACTCAGCTTCTTGCATTATGTATTAGGTGTAGTTTCTCATCCCATCTGTTTATTTCTCTGCTTTTTCAACATATCAGCTGAGGACAGTTTGAGAAAACTTGTTTGCATAATGTAGTCTTCTCCTTATATTCTGACTAATATGTTACTCAAAAACTATATTCATTTTTAATGACAGAGCTACCTGTGCATAATCTTTCTTTTCAGAGATGTTGGATAGATACCTGTGAGTATTTTCTCCGCATGCATGCAAGCATACAAGCTGTACCTGGTAGCATTTTCTTGTCAAGGTCACAAGAACATGTAAGACAGGTAGTGTGCATTTCCTTAATGAAAATACAGATTGCTCTGTCATGGAAATGACAGATTCTCTTCCCTTTCCTGGGGAAGAGAGTGTGAATTAGAATGGGGAAACCACCACAGAGACAGAAAAAATAAACTGCTTCACTACCATGCCTCATTATTGCAGGTCACTATGGTAGGACTTCTCACGACTGCTCATTGATCCTTTGTTTCCTTATAAATTTACTTTATTTTGTGATGTTTTTGTCCTTTTTTTTTTTTTTTTTTTTTCCAA
Seq C2 exon
AAAGAGGTATAGAAAGGTTCTATACTATGTGGTTGTGATACAAAAGAACTACAGAGCATTCTCGAGTAGGAAAAGGTTCCTTTGCCTGAAAAAGGCAGCCATAGTTCTTCAAAAGCAGCGTCGAGGCCAGATTGCTCGACGTGTTTTCAGGGAAAGACTAGAGGAGAAGCGGAGACAAGAGGAAGAAAGAAGAAAAGAGGAAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012954:ENSGALT00000021128:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.155
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.5=8.3),PF0520311=Hom_end_hint=PU(0.2=2.8)
A:
NA
C2:
PF0520311=Hom_end_hint=FE(13.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTCTCCGGGAGTCCTTGGA
R:
TTCTTCCTCTTTTCTTCTTTCTTCCT
Band lengths:
310-1309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]