BtaINT0097634 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020126 | MYO10
Description
Bos taurus myosin X (MYO10), mRNA. [Source:RefSeq mRNA;Acc:NM_174394]
Coordinates
chr20:56537940-56539107:+
Coord C1 exon
chr20:56537940-56538046
Coord A exon
chr20:56538047-56538873
Coord C2 exon
chr20:56538874-56539107
Length
827 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TTTTCGTTCTCATTTTTCAGAAA
3' ss Score
11.52
Exon sequences
Seq C1 exon
GTGTTCCTTCGTGAGTCCTTGGAGCAGAAACTGGAGAAGCGACGGGAAGAGGAGGTGACGCGGGCGGCCATGGTGATCCGGGCCCACGTCTTGGGCTACTTGGCAAG
Seq A exon
GTAAGAAGTATGCAGAGGGGAGGGGGTGTGTCTAGTATGTTTCACCTGATGGTGCTGGCTATTATATGCTTTCATTTAAAATAGACCCAGATGGTTTCTTATCAGGACCAGGCTAAGGAGAGGGCCAGGGCAGTGCTCCCAATTGGTGATGCCAGTTAGCTTGACGTGGGCAGTAAGTGGGAACAGGGGCTCGTGATGTCTCAGAGCAGTAGTGTCTCTGGGGGGCATCGGGCGAGATATTTAAATAGTTTCCCTAGCTCCTTGGGGCCATATACTGAAGCCACAGGCAGTTCGCCAGTTTACCTTGGTGTCGACCCACGGGGTCCACAGCGGCCCCCTCTCCCGGGTTTGCCCAATGAGACAGGCACTTTCTCGTGCATCCCTAGACCAGCGGGCTGGTCCACTGGTCATCATCTCATCATCATACATTACATTTTCTCAAACATAAAAGCCATCCTGCGGTGGTGAATCCTTTTCCCTTTTGCTCCTAAGAACAGCAGAAAGTATCACATCCCATGGTTCTGTTTACAGCCTCACTTCCTGCCAGGACTTTGCAAAGTCAGTTATTAGGAGTGATGTGTTTATTTAGCCAATATGATGATAGGCTTCTTGCTTGAGTTCTGTTATTATTCTTTTGTTTTTCTTCTGTTTTGCCCACAAGGGCCTACTCACTGGCTCCCTGTAATGAGTCCCATAATGAGTGGATCAGCCCCAAATGAGATCCTGCTCTCTTGTCGTGTAACATTAACATAAACTCCTGTGAAGAGCTTGTGGCCTCATTCCGTCCTCAGCAATGCTGTTGTGCTGTTTTCGTTCTCATTTTTCAG
Seq C2 exon
AAAGCAATACAAGAAGGTCCTTGATTGTGTAGTGATCATACAGAAGAACTACAGGGCCTTCCTCCTGAGGAGGAGATTTTTGCACCTGAAAAAAGCAGCTGTGGTTTTCCAGAAGCAACTCCGAGGTCAGATTGCCAGAAGAGTTTACAGACAACTGCTGGCAGAGAAACGAGCAGAGGAGGAAAAGAGGAAACGGGAAGAGGAAGAAAAGAGGAAACGGGAGGAGGAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020126:ENSBTAT00000026812:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.241
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.5=8.3),PF0061222=IQ=PU(76.2=44.4)
A:
NA
C2:
PF0061222=IQ=PD(19.0=5.1),PF0061222=IQ=WD(100=26.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGTGAGTCCTTGGAGCAG
R:
TTTCCTCCTCCTCCCGTTTCC
Band lengths:
334-1161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]