RnoINT0096752 @ rn6
Intron Retention
Gene
ENSRNOG00000010161 | Myo10
Description
myosin X [Source:RGD Symbol;Acc:1307193]
Coordinates
chr2:78036058-78037575:+
Coord C1 exon
chr2:78036058-78036164
Coord A exon
chr2:78036165-78037347
Coord C2 exon
chr2:78037348-78037575
Length
1183 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
CGGCCACTCTTCTTTTGCAGAAA
3' ss Score
10.64
Exon sequences
Seq C1 exon
GTCTTCCTTCGGGAATCCTTGGAGCAGAAACTGGAGAAGAGGCGGGAAGAGGAGATTGACCGGGCAGCCATGGTCATCCGAGCTCACATCTTAGGCTACTTGGCACG
Seq A exon
GTAAGAAGCATGCCTGGGGAGCGGTGTGAAGCTCTAGGAGGAGGGCTGTGACCCCAGTAGGGTGCTCTGTGGCTGTGCAGAGATAACCCAAGGTTAGATCCCATTAAAAGTCACATGGAGACAGGGGTTCCACCAAAGCCTCTGGCGTGGCTCTTTACTGTGACGTTGCTACCTGAGTGCATCTCTCTCATCCTAAACACTAGGGCTCGTGATCATTTCAGATTCTGGAGCTTTTCATATTGGAATACCTTACCTGCCTGGTCTCTCCTGAGTGGCAGTCAGAAATTCAAAAATACCCCAAGATCTGACTCTTTTGTTTTTCTGTGCTGAACACTGATTCTCCCACCCCAATACTTGTTCATGCATCCTCCACATTCATTCTGTCTCCCAGCTCCATCCCCAGCCCTGGAAGCTGAAGGTCTACTTCAGTTTATGTGTGTGGTGTTTTGCCTTGCATGTATGTACTTCCTGGTAACATGTGTGCACGCAGATGCTTGCGAGCTGCTGTGGGGGGTGCTAGGAATTGAACCCTGGTCCTCTGGAAGAGCAGCCTGTGCTCTTAGCCACTGAGCCATCTCTCTAGCTCTAGACTCTGAAGATTTGAAGCACATCAGCACTTAAGAAATTGCAGATTTGAGGTTTGGGGATGAAGGCTCCACAGCCGGTGTCACTTTGTCTAGAGACCCATTCCCTAGCTGCATCTTTCATGGTTGTTTTGTTGTTGTCTTTTGATAAAAATTTCACTGTGTAGCCCTGACTGGCTTGGAACTCACGGTGTTGGTCAAGTTAGCATCAAATTCAGAGATCTCTGCCTCTGCCTCTGCCTCCCCCTTCCAAGTGCTGAGACTAAAGAATGTGCTATCAACTCTACCTCGTGGTCTTTTGATGGCTGTACTTTGCAGACCATGTGAAATGCTAGGCATTCCAGTTTTCTGAAGCATGGGGCTGTCCTGCTGCAGGAGCATAGCCGGGATAAAGATGGGACTCTGACTTTCTTGTGTTTGGAATTATTCTTTTGTTTTTCTTCTGATTTGTTTAGTCTCAAGTCTCTTCCTCCTCTGACTGCCAGTCTCCATAATGAGAGACCGGGTCCAAGTCTGTGTCCTCTCCTTTTGTCTTCTAGTGTAAGCTCATCTGACTAGCTCATAGCCTCATTACCTCTGCGGCCACTCTTCTTTTGCAG
Seq C2 exon
AAAGCAATATAGAAAAGTCCTTTGTGGTGTGGTGACCATACAGAAGAATTACAGAGCTTTCCTCGCGAGGAAGAGATTTCTGCACCTGAAAAAGGCAGCCATCGTGTTCCAGAAGCAGCTCCGAGGACGGCTGGCACGCAAGGTTTACAGGCAGCTTTTGGCCGAGAAACGGGAGCTGGAGGAGAGGAAGAGGTTGGAGGAAGAGAAGAAGAGAGAGGAAGAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010161:ENSRNOT00000014022:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.169
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.7=8.3),PF0061222=IQ=PU(76.2=44.4)
A:
NA
C2:
PF0061222=IQ=PD(19.0=5.2),PF0061222=IQ=WD(100=26.0),PF0061222=IQ=WD(100=27.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTCGGGAATCCTTGGAGC
R:
TTCTTCCTCTCTCTTCTTCTCTTCCT
Band lengths:
326-1509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]