GgaINT0123770 @ galGal3
Intron Retention
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8915021-8915375:-
Coord C1 exon
chr17:8915270-8915375
Coord A exon
chr17:8915194-8915269
Coord C2 exon
chr17:8915021-8915193
Length
76 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CAGCTGCCTCCCTCCCACAGGGC
3' ss Score
10.78
Exon sequences
Seq C1 exon
GTACGTGAAGGGCTACCCACCCAACTCCCCGTACATCGGCAGCTCGCCAACCCTATGCCACCTCTTGCCTGAGAAAGCCCCATTCTGCTGCCTGCGGCTGGACAAG
Seq A exon
GTGAGCAGTGCACTGCCAGGGCTGTGCCGGGGGAGGCCAGGCGCTGCCACGGGTCCCAGCTGCCTCCCTCCCACAG
Seq C2 exon
GGCTGCAAGCACAACAGCTTTGAAGATGCCAAAGCCTATGGCTTTAAGAACAAGTTGATCATCGTGTCGGCAGAGACTGCAGGCAATGGGCTGTATAACTTCATCGTCCCACTGCGTGCCTACTATCGGTCTCGCAAAGAGTTGAACCCAATTGTGTTGCTTCTGGACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645:ENSGALT00000038919:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGCCTGAGAAAGCCCCATT
R:
TTGCGAGACCGATAGTAGGCA
Band lengths:
180-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]