RnoINT0078051 @ rn6
Intron Retention
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3352863-3354137:+
Coord C1 exon
chr3:3352863-3352968
Coord A exon
chr3:3352969-3353964
Coord C2 exon
chr3:3353965-3354137
Length
996 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
TGGGTCCCCCACATCCCTAGGGC
3' ss Score
7.9
Exon sequences
Seq C1 exon
GTATGTGAAGGGCTACCCTCCCAACTCACCCTACATTGGCAGCTCCCCGACTTTATGCCACCTCTTGCCTGTAAAGGCCCCCTTCTGCTGCCTGCGACTGGATAAG
Seq A exon
GTAAGGCCACTCCACTGTGACCATCCGACATCCCACTTTGGTGACATTGAGTTTTGGTTGTGCTGCAAATGGTGTAGGAGCAAACCCCTCTCTGCCTTACCCTGCCTGCATGCTCTCTGTCTCCCTGCTCTGACCTCACAGCATCCTTCTCTGAACACGCTGAAAGCTGATTAGGACCGTCCTGTCCCTCACACCCAAACACCGTGTGTTTCCAGAGGGTGAGGACCATCACTGCTAGGGTCAGTCAGAGCCAGAGTCTGCCAGGGCTCCAGGGTCTTTGTCCTCTTTAAGCCAACACATGCCTGTCATTCTCCGCTTCTGCTTCCTCAGGATCTCTGGCCATGCTGCCCCCTGTGGAAGTGACTATTTCTCTGTGGTTCAGTGATTACAGACATAGGGCAGGGTAGCTGCCTCACTGTGAATCACTGCCTTAGCTCTAGGCCCTTCCAGTTGTTCTTAGCATGTTACCAAGAGTCAGGCGTCTGTTGCACTCACGTGGTTCAGGCACATGGCCCTTGTTTTGCTTTGGGCTCATACTGTCTCATGTTGTTTGATGCCTGCCAGCCTCTCCCTGTACATGCCAAGCCGTAGACTGGGATCAGGCACCTCCAGCTGAGGTCTGACTCCCTTTGGGGAAAGGGGCCTTAGGAAACAGGATCATCTGCTGCCTGTGGCCTTGCACCAGGGCTGTGGTGGGCAGAGCTAGGAAATGCATGTGCGTGAACACACACACGCACACATGCGTACACACCTGTGCACACATGACTTGGCCCTCTGTATTTCTGTAGCTAAATACTACATTGGCTGACTTCCATTAAGCTGTGTGGGGCGCTGACTTTAGTGGCTGCCAGCAGGGTTGAGCCCTGGTGGCTGGTGGCCCCATATCTCCCCAGGCTGCCATGTGGACAGGGACAGGTTGCTTGTCCCTGCTGTTATTGGCCCATCAGCTTCCCCAACAGTCAGGGCGGTGCCAGCCTGGGTCCCCCACATCCCTAG
Seq C2 exon
GGCTGCAAACACAACAGCTATGAGGATGCCAAGGCCTACGGGTTCAAGAACAAGTTGATCATCGTCTCTGCTGAGACGGCAGGCAACGGGCTCTACAACTTCATCGTGCCTCTGCGTGCCTACTACCGGTCCCGCCGGGAGCTCAACCCCATTGTGCTGCTGCTTGACAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283:ENSRNOT00000023542:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTACCCTCCCAACTCAC
R:
TTGTTGTCAAGCAGCAGCACA
Band lengths:
270-1266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]