GgaINT0125901 @ galGal4
Intron Retention
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10421177-10421673:+
Coord C1 exon
chr17:10421177-10421203
Coord A exon
chr17:10421204-10421597
Coord C2 exon
chr17:10421598-10421673
Length
394 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
3' ss Seq
TCTTTGGTTTAATTTTTTAGGGA
3' ss Score
9.02
Exon sequences
Seq C1 exon
GATTTATTGGTTCTTGAAGAACAAGAG
Seq A exon
GTAAACGTAAGCTTACACTTAGTTCATAGATCTATTCAATGAATCGAGCTTTGTATTTGAAATATTTGCACTAATGTATTTGTGACAAATTTCAAGTTGATGCTTATTGCAGTAAAAAATGTGGTATTAGTTTTCAACATGAAATTGAAAATCACTTTAAGCACCATTATGAAAATTATGTTATATAACTCATAGTTTATAATCAAAAGTAGATTATTAGCTGTCTGCTATTTGTGCACGTAATGGAGTTGATATGAGGTGAGTACTCACATGTGCTGGATATAGACAAAGCTACATATTTAAAAAGAAACCTTAGATTTGTAAACATGTAAATTATTTTAGGCCTTTAGTTTGACTGATTCTTTAGCTAATAATCTTTGGTTTAATTTTTTAG
Seq C2 exon
GGATCTGTGAATTTTAAATTTGGAGTCCTTTATGCTAAGGATGGGCAGCTTACAGATGATGAAATGTTCAGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847:ENSGALT00000001243:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0214510=Rap_GAP=PU(2.1=15.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]