GgaEX0000842 @ galGal4
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
GTPase-activating Rap/Ran-GAP domain-like protein 3 [Source:RefSeq peptide;Acc:NP_001025847]
Coordinates
chr17:10420860-10421673:+
Coord C1 exon
chr17:10420860-10420923
Coord A exon
chr17:10421177-10421203
Coord C2 exon
chr17:10421598-10421673
Length
27 bp
Sequences
Splice sites
3' ss Seq
ACATAGTATTTTATTTACAGGAT
3' ss Score
6.06
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
TGCAATGAGTCTTGAGAAATTTGAGAAGGGACCAAGGGAAATTTTTCATCCTGATATACAAAAG
Seq A exon
GATTTATTGGTTCTTGAAGAACAAGAG
Seq C2 exon
GGATCTGTGAATTTTAAATTTGGAGTCCTTTATGCTAAGGATGGGCAGCTTACAGATGATGAAATGTTCAGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847-'15-20,'15-19,16-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0214510=Rap_GAP=PU(2.1=15.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATTTGAGAAGGGACCAAGGG
R:
TCATCATCTGTAAGCTGCCCA
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]