RnoEX6016505 @ rn6
Exon Skipping
Gene
ENSRNOG00000057044 | Garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:RGD Symbol;Acc:1564019]
Coordinates
chr3:12086243-12096526:-
Coord C1 exon
chr3:12096463-12096526
Coord A exon
chr3:12092595-12092621
Coord C2 exon
chr3:12086243-12086318
Length
27 bp
Sequences
Splice sites
3' ss Seq
TCTGAATCTTTGCTTGACAGGAC
3' ss Score
7.35
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGCCATGAACCTGGACAAGTTTGAGAAAGGACCTAGGGAAATTTTTCATCCTGAGATACAAAAG
Seq A exon
GACTTGCTGGTTCTGGAAGAGCAAGAG
Seq C2 exon
GGCTCTGTGAATTTCAAATTTGGGGTTCTTTTTGCCAAAGATGGGCAGCTCACAGACGACGAGATGTTCAGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057044-'17-19,'17-18,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0214510=Rap_GAP=PU(2.2=15.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATGAACCTGGACAAGTT
R:
AGCTGCCCATCTTTGGCAAAA
Band lengths:
114-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]