GgaEX0000842 @ galGal3
Exon Skipping
Gene
ENSGALG00000000847 | GARNL3
Description
NA
Coordinates
chr17:11151403-11152216:+
Coord C1 exon
chr17:11151403-11151466
Coord A exon
chr17:11151720-11151746
Coord C2 exon
chr17:11152141-11152216
Length
27 bp
Sequences
Splice sites
3' ss Seq
ACATAGTATTTTATTTACAGGAT
3' ss Score
6.06
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
TGCAATGAGTCTTGAGAAATTTGAGAAGGGACCAAGGGAAATTTTTCATCCTGATATACAAAAG
Seq A exon
GATTTATTGGTTCTTGAAGAACAAGAG
Seq C2 exon
GGATCTGTGAATTTTAAATTTGGAGTCCTTTATGCTAAGGATGGGCAGCTTACAGATGATGAAATGTTCAGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000847_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.135
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0214510=Rap_GAP=PU(2.1=15.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAATTTGAGAAGGGACCAAGGG
R:
TCATCATCTGTAAGCTGCCCA
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]