DreEX6011841 @ danRer10
Exon Skipping
Gene
ENSDARG00000060631 | garnl3
Description
GTPase activating Rap/RanGAP domain-like 3 (garnl3), mRNA [Source:RefSeq mRNA;Acc:NM_001128527]
Coordinates
chr5:32794346-32794998:-
Coord C1 exon
chr5:32794935-32794998
Coord A exon
chr5:32794534-32794560
Coord C2 exon
chr5:32794346-32794421
Length
27 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTATGTTGCTGCCAGGAC
3' ss Score
7.8
5' ss Seq
GAGGTATAT
5' ss Score
7.3
Exon sequences
Seq C1 exon
TGCCATGAATGTGGATCGTTTTGAGAAGGGCCCGAGGGAAATCCTCAACCCAGAGATTCAGAAG
Seq A exon
GACTTACTGGTGCTGGAGGAGCAAGAG
Seq C2 exon
GGAAGCGTTAACTTTAAATTTGGTGTTCTTTATGCCAAGGACGGACAGTTGACAGATGATGAAATGTTCAGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060631-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0214510=Rap_GAP=PU(2.1=15.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATCGTTTTGAGAAGGGCC
R:
TCATCTGTCAACTGTCCGTCCT
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]