HsaEX0027029 @ hg38
Exon Skipping
Gene
ENSG00000136895 | GARNL3
Description
GTPase activating Rap/RanGAP domain like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
Coordinates
chr9:127320715-127332349:+
Coord C1 exon
chr9:127320715-127320778
Coord A exon
chr9:127325069-127325095
Coord C2 exon
chr9:127332274-127332349
Length
27 bp
Sequences
Splice sites
3' ss Seq
TTTAAAACTTTATTTGACAGGAC
3' ss Score
6.92
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TGCCATGAATCTGGACAAATTTGAGAAAGGCCCCAGGGAAATTTTTCATCCTGAAATACAAAAG
Seq A exon
GACTTGCTGGTTCTTGAAGAACAAGAG
Seq C2 exon
GGCTCTGTGAATTTCAAGTTTGGGGTTCTTTTTGCCAAAGATGGGCAGCTCACTGATGATGAGATGTTCAGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136895-'30-32,'30-29,32-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0214510=Rap_GAP=PU(16.0=15.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAAATTTGAGAAAGGCCCC
R:
CTCATCATCAGTGAGCTGCCC
Band lengths:
115-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development