BtaEX0015381 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006948 | GARNL3
Description
GTPase activating Rap/RanGAP domain-like 3 [Source:HGNC Symbol;Acc:HGNC:25425]
Coordinates
chr11:98083983-98095239:+
Coord C1 exon
chr11:98083983-98084046
Coord A exon
chr11:98085023-98085049
Coord C2 exon
chr11:98095164-98095239
Length
27 bp
Sequences
Splice sites
3' ss Seq
TTTTGAACTTCATTTGACAGGAC
3' ss Score
7.15
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
TGCCATGAATCTGGACAAATTCGAGAAAGGCCCCAGGGAAATTTTTCACCCTGAGATACAAAAG
Seq A exon
GACTTGCTGGTCCTTGAAGAACAAGAG
Seq C2 exon
GGCTCTGTGAATTTCAAGTTCGGGGTTCTTTTTGCCAAAGACGGCCAGCTCACAGATGATGACATGTTCAGCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006948-'14-9,'14-8,15-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0214510=Rap_GAP=PU(2.1=15.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAATTCGAGAAAGGCCCCA
R:
GTCATCATCTGTGAGCTGGCC
Band lengths:
113-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development