GgaINT0141263 @ galGal3
Intron Retention
Gene
ENSGALG00000002675 | SCUBE3
Description
NA
Coordinates
chr26:3984518-3987625:-
Coord C1 exon
chr26:3987500-3987625
Coord A exon
chr26:3984653-3987499
Coord C2 exon
chr26:3984518-3984652
Length
2847 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
CCATCTCATTCCCTTTGCAGACC
3' ss Score
11.44
Exon sequences
Seq C1 exon
ATGTGGATGAGTGTGAGCGGGAGGACAACGCAGGCTGCGTCCACGAGTGTGTCAACATCCCCGGGAACTACCGCTGCACCTGTTACGATGGCTTCCGCCTGGCACACGACGGCCACAACTGCCTGG
Seq A exon
GTGAGCGCTGCGCTGCCTCAGGGATGGCTCTGTGGGAGGGTTTGTTGTGCCAAGGTTTGCTGCTGGCTGAGGTTGCTGATTCAATGGACCTTGGCAGCGTGAGGTCCTCAGCATCTTTGCTTTTGCCAAGAAACCGAGGCAGTGGCAGCCTGCAAAGAGCTCAAACCCAGCAGATTTGGGAGTGTGCAAGCACCAACAGCTTGCATGTGAACATGAAGCTAGCATGCAGATAAAGCAGACACAGCCCTGTTTTGTCCCTCTGTCCTTGCAGAGGGCCAGGACCCCCATGCACTTTGCTTGGCTCCATGCTGCAAGCCTCATCCTTGCACCTGCCACGATCCCACTGATTTGCCTTGCCTCAAGGAGCTGCAGCTGAGGGCTTTCAGTCTCCCTTCCAGGCTGTTATGTTGCTGGTGCTGAAACCAGATAATCTGCAAGTTGCATATTTCAGATGTGGTGTCTGGGAGAGCTGCTGGCAGCAGAGGCATGGGAGATATCTCATGAAGTGATGGCTCTCCAGGGATGGGGACAACATTGCTTCCCATTGCACAGTGGGGATGCTGTGGGTTCTGGGACAAAACTGGATGGGGTTCCTCCATATGTTGGGATAAGGTGGGATTGGAGGGCTGGGTTTGGGGCCGGCGGATGGAAGCAGCGCGTGCTGCTGTGCTGCCGGAGGCAGGACCAGCCTGCAGGGCTCTCCTGGGCGCTCGTGCTTGAGGTCAGCCCTGCACCTGCCAAAATAGATGAGTTAAGAGCAAATACGGTGGAGATGTGAGCCGGCGAAAGGGCTGGGTAAATAATCCTGAGGCCAAGACAAACCCGGCATCTGCCTACGGAGAGCTGCGCATCCTTCCACTGCCCCGAGCTCCATCCGGCTGCGGCACGGCCGAGTCCTCGGTGCAGCCGCGCTGCCCGCACCCCAACGCCCGCTTCCTTCCGCAGCGCCCGCGGGGGCACCCGGCCGCCCACCTCCCCCAGCCCGGGCTGCGGCGTGCTATTTTCTAATTAGTGTCTGCAGCAGGGTCATTAATGAGCTCATCACTAGAGGGAGGAGGGGGAAGGGATTCTGGACACATACGCTTCGCATTAACTGCCATCACTGGGAACTTTGCAGCCTCCTCGGTGAAGAGGGAGATTTACACAGCTGGAGGGAGCGCAGGCGGGCGGCCCTGCCTTCCCCTCCCTGGGGAGGATGAGCCCAAGGAGAAGAAAGGGAAGCTGGGCTCGGCAAGCCACAGACGTCGTGTGTTTACAGAGCGGGGTGGGAGGGGAGCAGCGAACGTGGGGCAGCCCCGGGTCCCTGCAGCCCTTACACAGCTCATCCCAATGAAGCATCTCAGCCACGCTGCTTTGCTTTCAGGACAGCACGAATTTACCCTTTGGAGCCCATTCCACAGAGGAGGATGTTGATACTCTTTGCTCTTTGGCTGCAGGGATGAGTCCTGGGGAGTTTTCCCCACCTTCATCCATCCCAACCGTAGGCATGCTTTTCACACACCCATTTGATTGGAATGCAGAAGCAAAGCAAAGCCAGGGTCCTGCCCAGGCTTTGAAATGCCCAAATGGAGAGAAGCATCCAGGATCCCATGCTCCATGCACCAAATAATCCTCAGCCATTGGGCGCTTCCCAGGGAGAGCTGCAGGAGAGGTCCAGCTCCTGCCAGGTGCTGATGGGTCATTGCTGGGTTGGAGGGTGCAGCAGCCACTGAGCATCCCCTCCGTGGGCGACCTTTTGAACCAGGACAGGAATTCAAGCCCTCATCCTGACACAGGGCCTTCTGGCTTCTGCCTGCCTCGTTACATTTAATAAAATAGGTATTAGAGCGGCGGAGTCTCGTTTCAGCCCTCGGTTTGGAACAGCTGCCTCCTCATTTTTGTGCAGGCCTTGAAGGAGAAGTCGCAAGATGTTAAGCCCTTGTTATAAACGGGGGATTTGAGGAGAGTTACTGGCATCTGCAGGACATTGCTTGGCTGGGACAAGACCTGGGGAAAGCTGGGAGCCCTCTGCCATCGCATGGGATGTCCTGGTTTGTCCTCCAGTGGCCTCAGGCGGTGCCACTGCTCAGTGACAGCTCTCAGCCAGGGCTCAGCCCCGCTCTGAGCATCCCTGGGCTGCAGCAGCACAGTGCACAGTGCAGTGCTCGGGGTGTATTCATCCCAAAAGCAAGGAGTTCGGTCAGGCTGTGTTCCCCCATGTGGGCTGTGAGCCCCTCTGTGCTCTGTCTCTACGCTGCTCTTGCAGTTTCTCCAGTATCCACTGCTGGCAGGGCTCAGCTTTCACCCAAGCTCTGGGATGCTCGAGTTTGCAGAGGTTTTCTTTGGCACAGGGCTCCCTGCTCCCGGTGCCGTCACCCAGAGAGGACGGGGACACAGCAACGTGGGGCTGTGGCACTGATCCTGCAGCACTCAGGCTGAGGTTTTCATCTCTGTCTCCTTCCCAAGCCGGGATGCTGCAGGGGATTTGAGTCTCCTTAGAAGTAATTGTCCCCGCTCTGGGCTAGGGTTCCCCATAATGAAGTCCAGGCGCTTCCCCACCAGCAGCAGACAGAGGGGCACAGCCTGCCCAGGGATCTGGGACAAGGAGAACCCCTTTCTCTGTGGGTTGGTGTTCCCATCTGCAAAATGGGGCCACCGCATTTTTTGCTTCTGGAGAAGCTGTGTGGCCTCTGAAATCCACCCCTGGATGTGCCTTGGCTTCATCCCCTGCAGCACTCAGCATCGCCCTTTCTTCTAGCTGGGGGACCAAGGATGCAAAGCAGAAGCTGTTTGCTGCACAGCACATTCCTGTCCCACTCCACTCAGTGCTGCGGAACCACTCTCACCTCCATCTCATTCCCTTTGCAG
Seq C2 exon
ACCTGGACGAGTGCTCAGAGGGCAACGGCGGCTGCCAGCAGACCTGTGTCAACATGATGGGCAGCTATGAGTGCTTCTGCCGGGAAGGCTTCTTCCTCAGTGACAACCAGCACACGTGCATCCAGCGCCCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002675:ENSGALT00000004215:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF146701=FXa_inhibition=WD(100=86.0)
A:
NA
C2:
PF146701=FXa_inhibition=WD(100=78.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]