GgaINT0141273 @ galGal3
Intron Retention
Gene
ENSGALG00000002675 | SCUBE3
Description
NA
Coordinates
chr26:3971974-3972322:-
Coord C1 exon
chr26:3972224-3972322
Coord A exon
chr26:3972136-3972223
Coord C2 exon
chr26:3971974-3972135
Length
88 bp
Sequences
Splice sites
5' ss Seq
GGGGGAAGG
5' ss Score
0.41
3' ss Seq
GATTGTCACCCTGCATGCAGGCG
3' ss Score
6.39
Exon sequences
Seq C1 exon
AGACTGTCGCTGCCCCAATCAAGCAGAAGGCTTCCTTCAAGATCAAGGATGCCAAGTGCCACCTGCACCCGCGGGCTAAGGGCAAGCAGGACGAGGGGG
Seq A exon
GGAAGGCTGTGGCACAAGGTGAGCAGGGGCGGGGGGATGCTTGTCCCACCCAAAAGGGACGGGGCGCTGATTGTCACCCTGCATGCAG
Seq C2 exon
GCGGTGCTGCACCCTGCTCCGACTGCCAGGTGGCCTTTGTCAACCTCAAGTGTGACTCATCCAAGAAGGGGAAGGGCCGCCGGGCTCGCAACTCCTCCGGCAAGGAGGTGACGCGCATCACACTGGAGTTTGAGGCAGAGATCAAACCGGAGGAGACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002675:ENSGALT00000004215:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=NA C2=0.255
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAAGGGCAAGCAGGACGAG
R:
TCCGGTTTGATCTCTGCCTCA
Band lengths:
175-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]