GgaINT1004316 @ galGal4
Intron Retention
Description
NA
Coordinates
chr7:19020865-19023426:+
Coord C1 exon
chr7:19020865-19021221
Coord A exon
chr7:19021222-19022973
Coord C2 exon
chr7:19022974-19023426
Length
1752 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
TGTAATGTCTTTGTTTTCAGGTA
3' ss Score
11.3
Exon sequences
Seq C1 exon
CTTCGAGTTTTCAAGTTGGCAAAATCTTGGCCAACTCTAAATATGCTGATTAAGATTATTGGCAACTCAGTGGGGGCTTTGGGCAATTTGACCCTGGTGCTGGCCATCATTGTGTTCATTTTTGCTGTTGTTGGGATGCAGCTGTTTGGGAAATACTACAAGGAATGTGTCTGCAAGATCTCCAGCGACTGTGAACTTCCACGCTGGCACATGCATGATTTTTTCCACTCTTTCTTGATTGTATTCCGAGTGCTGTGTGGAGAATGGATAGAAACGATGTGGGACTGCATGGAGGTGGCAGGCCAGCCTATGTGCCTTACTGTCTTCATGATGGTCATGGTGATTGGAAACCTAGTG
Seq A exon
GTATGTAGCCCAAATAAATCAAGAATTCATGTAGAGAAAGAATGATAATGAAACAAGTAATTAAGCAGTTTTGTAGCATTAGATGTGCTATTTAAATTTGGTTTTTATGATTTTGAATGCTGTGAATATAGACTCAGCATGTTATATTTCTCATCCTAAGTAAAATCCTCAAAATGGAGGATGGATCTCTCGTAGTAAAATTCAGAGGATATGGGTGAGAAGGAGAAGCATCGTGTTCAGGGTTTTGTGAACTAATCTGGTTACTTAGAGTCGCATAGGCACCACAAACATTCACCTTGGATGGGAGTTTGCTATTGGCAGAAGCTGACTTAGCAGGGCCTTTTCTTCCTAATCGGTGGAGGCATCGCTTGAAATTACACATAGCCAGTTGTTTTCTTTTTCTTTCTTTTTTCCCCGCTCTTTTCGGTCCAAAAGACTGCTTTAAAATTCTTTGACTCTGAAGTTTAATCCATTTTAAACCCTGCTTACTTTTACACAGTAGGGGAAAGGAAATTTGAGTAGGAGGGCAGTAGTACTGCTTAAAAAACAGATTCAAATACTTCACATTTTCTTTCACCCCTATTAATTTTTTGCTTCCCAATTCTTAAGTGCTTTTTACAAATGTTAAAATCAGTACCTTCTTTCTGCATTAGACCAGTTTGTACATTGCCATGTATAAATTTGTCTTGTAAAATATGATTTATATTTGTTAACTCACTAGTGTTTGAGACCTTAGTCGCTCAGCCTTTTACTCTGCTTTTCAGTCAGAGAAAAAAACACCCACTCAGTCTTCCTATGAAATTCTACATCTTCAGGTAACTGACAGCAGCAAAAGAGGTTTCAAATTAGCCATCCTGATTTCCTTTTTTAGCAGCAAAATTTCTAATAGGAATAAGCTAAATAGCTTCAAGCCAGTCATGCTACTCATGCGACAGCCACTTGCTCCAGGATTTTCTCTTGTCTTATATTCAAAATTTTTCACAGCATTCACTGTATTTTGATTTTATAACATAGCTCTAGCAGAATTTCTTATGTAAACAGACAATCTCTACTGTTTCTTCAGGGATCTGTTTTGCAGTTGTCTTCCTGTATTTCCAACAACATAGTTTTACTCTGCCTTCAGAGCTGCCTAGAAGGTTTTGGTCTGAAGACCTTAACAGCTGCTACTCTACAAGTTAATTGGATACTGCTCTATCCCACACCTTTTGAGTCTTGGTGAACCCTGAACTTACATAACAGAAATTTATTCATTCTTACAGTGGGAAGATGATGAGAGCTAAGTAAGAATTGAGGGAAGGGTTGCTTTATTGGCTTTTATTGACTTTTGTTTTAAGTCACATATAGCAAAATATTTGTGTGGGTTTGTACCAGCCTTTAAGAAAACCATTTCTGTGTAGATCAACTATGTCTTGCTGCAGAGTGTTTCCCTGTGCTAGAGAACTAAACGTTTTGGATTGATTCAGTCAGTGCCAAATACATTCATTTCTGACCTTAATACCTTTTCACAAATATGAGCAGAGGGGGAACTTAGAAATTTTTGTATCTTGTATTACTATATGACTACTGTCAAAAAGAAACTCCATTGTGTGAGAGCAGGTGTTGTGCTTACATTGTATTTACATTTTATTTACTATCTAATTTCCTGAATCATGCAGCAGAGGAGAACATGAAATCTAAGTTGTTTATAGTAGATGATAGAAGAGACATATGAATTCAATTAAGAAAACCCAGGTGTAATGTCTTTGTTTTCAG
Seq C2 exon
GTATTGAACCTTTTTCTGGCCTTGCTGCTGAGTTCATTTAGTTCAGACAGCCTTTCTCCTACTGAGGATGATAATGAAATGAATAATTTACAGATAGCTGTTGCAAGAATTCAGAAGGGAATAGATTACGTGAAGGAAAAAGTAGGTGAATATATCCAAAAATCTTGCTGGAGGAAACAAATGGCTGCAAATGAAAGAACAGCAACAGATCAGTTGAATGATGAAAGACACCATTGCATTTCCAACTGTACCGTTGCTGAAATAAAGGCAGACACAACTTACCACAAAAATGAGAATGGAACAGCCGGTGTTGTAGGAAGCAGTGACTATCCACTGTTCATAAACAACCCAAGCCTTACTGTTACGGTACCGATAGCTGTTGGAGAATCTGACTTTGAACATCTAAATACAGAAGAGTTTAGTAGTGACTCAGATTTGGAGGAAAGCAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027793:ENSGALT00000017809:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.136
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(62.1=100)
A:
NA
C2:
PF0052026=Ion_trans=PD(4.2=5.3),PF065128=Na_trans_assoc=PU(59.9=84.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGGCACATGCATGATTTT
R:
TGCAGCCATTTGTTTCCTCCA
Band lengths:
345-2097
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]