GgaINT1004319 @ galGal4
Intron Retention
Description
NA
Coordinates
chr7:19031483-19032515:+
Coord C1 exon
chr7:19031483-19031637
Coord A exon
chr7:19031638-19032341
Coord C2 exon
chr7:19032342-19032515
Length
704 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
ATACAACCCATTTTTTACAGGCT
3' ss Score
5.13
Exon sequences
Seq C1 exon
GCTGTATACAGAAGTTTAAATGCTGTAGATGCAGTATAGAAAGCAGAAGAGGAATAATCTGGTGGAACCTTAGAAAAACTTGCTACAGGATAGTAGAACACAACTGGTTTGAAACATTCATTGTCTTCATGATTCTTCTCAGCAGTGGTACTCTG
Seq A exon
GTAAGTAGAACATCCACCCATAGAATAGAAACAGTGTCTACAAGGAATGTTTTCTCAAAGATACGGTTAGAACATATTTGTGTTCACTAAGGAAAAATGGAAAGTTGATTAAAAAGAGAGCTTGAAACTAAGTTCCCAGAATATTTTCCCAGTACATATAAAATCATTAAAATTCTGTTGTCAAAAAACCTTCTACAGGTCAGTTATGATGAATACAAGATGATAGATGTGTGAAAGTGTGCTTATCAAGAGGATTACACTTAAAATCTTGTTGAAGAAATTATATCAATAACTGGAACAGTTATTCAGCTGTAAATTAAAATTGTCTTCAAAAGCAGTATGGATACTGATTTTTTTCACATTCTCTTATTTTTCACTTCTATATTTATTATCATCAGGAGACTGACTTCTCTTTGAGCCTAAGTGCGCTTATCAGTGACAGGTTGTAATTCTGTGTTGACTATTAATCAGATTTTTTAAAACTTATTTGGCAACTTTAGTCATTATATTGTAAGCCCATTATCAGGAGACAATAACATCCAAAACTTATAATATACATGTAGTCTGTGCTTATGCTGGCTTTTCAAGGTAAAAAACAAAGTTAAAAAGCAATTTTACTTTGTCTTTTTTTCATCAGTTCTTACGGCTTCTTAGTTTCCAAAGACCTATTAATATCTGACTTACATACAACCCATTTTTTACAG
Seq C2 exon
GCTTTTGAAGATATATATATTGAACAGCGCAAGACTATCAAGGTCATACTGGACTATGCTGATAAAATCTTCACTTACATCTTTATTCTGGAAATGGTGCTAAAATGGGTGGCTTATGGTTTTCAGACTTACTTTACTAATGCCTGGTGCTGGCTGGACTTCCTGATTGTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027793:ENSGALT00000017809:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF065128=Na_trans_assoc=PD(20.8=84.6)
A:
NA
C2:
PF0052026=Ion_trans=PU(17.0=67.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGTATACAGAAGTTTAAATGCTGT
R:
CAACAATCAGGAAGTCCAGCCA
Band lengths:
327-1031
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]