GgaINT1004325 @ galGal4
Intron Retention
Description
NA
Coordinates
chr7:19037780-19038539:+
Coord C1 exon
chr7:19037780-19037884
Coord A exon
chr7:19037885-19038268
Coord C2 exon
chr7:19038269-19038539
Length
384 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
TTTCTTTTTTCTCCCTTCAGAAT
3' ss Score
12.49
Exon sequences
Seq C1 exon
CTTGGAGGACAGGACATTTTTATGACAGAAGAACAAAAGAAGTATTACAATGCAATGAAGAAGTTAGGTTCCAAGAAACCACAAAAACCTATACCTAGGCCAGCG
Seq A exon
GTAAGAATACGTGCTATTCTTGTGTCATGTGCATTGAGTAACAGCAGTACATTAACTATCAAAAGTCTCCCTTAACTCTAAAATGGTCTAGGCCTAATTGAAATTCTCCATTCTAAACTGAAATTTGTTCATATTTTCATCCTTCAGGAAAATACTCTCATAATTATTATGCCTGGGGAAATACAGAATCAGAGGATCTTAAGAAGTAGAAAGGTGTAGGGTTTTGAGGGGGAAACATAAATCTAGAAAAGTCACTGAAGAGTCCTTTTAAGTTTTTCAGCCTTTTGCTTGGTTGTATATTTTGAGTAAGAAAGAAAAAGAAAAAAAAAAAAGAATGTTCATTACATACAAGCTACTATCACGTTTTCTTTTTTCTCCCTTCAG
Seq C2 exon
AATAAATTGCAAGGTTTGGTGTTTGATATTGTAACAAAGCAAGCATTTGACATCGGCATTATGGTCCTCATCTGTCTTAACATGGTCACCATGATGATAGAAACAGATGACCAGAGTGAACTTATGCAAAATATTTTATACTGGATTAACTTTGTCTTTGTTGTCCTTTTCACTGGAGAATGTGTCTTAAAACTGTTCTCACTCCGTTATTATTACTTCACTGTTGGCTGGAATATCTTTGATTTTGTGGTTGTTATTCTTTCAATAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027793:ENSGALT00000017809:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0052026=Ion_trans=PU(20.4=47.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGACAGGACATTTTTATGACA
R:
AAGATATTCCAGCCAACAGTGAAGT
Band lengths:
342-726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]