GgaINT1004328 @ galGal4
Intron Retention
Description
NA
Coordinates
chr7:19014330-19016234:+
Coord C1 exon
chr7:19014330-19014710
Coord A exon
chr7:19014711-19016101
Coord C2 exon
chr7:19016102-19016234
Length
1391 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGG
5' ss Score
6.17
3' ss Seq
TTTTTTTGTTTGTTTCATAGAGT
3' ss Score
9.43
Exon sequences
Seq C1 exon
TCTTTACTAAGCATTCGTGGCTCCCTGTTTTCTCCCAGACGTAGTAGCAGAACAAGTCTTTTCAGTTTTAGAGATCATGGAAAAGAGATAGGATCTGAAAATGACTTTGCTGATGATGAACACAGCACATTTGATGATAATGGAAGCAGAAGAGGTTCTCTTTTTGTACCACTGCGACACAGTGAACGGCGTGGTAGTAACATTAGTCAGGCTAGCAGACCGTCAAGAAGGCTGACACTGTTTCCAGTGAATGGGAAGATGCATAGCACTGTGGATTGCAATGGAGTGGTTTCTTTAGTGGATAGACCTCCATGTCTCTTGTCACCTACAGGGCAGCTGCTGCCAGAGTTGATAATAGACAAACCAACAACTGATGATAAT
Seq A exon
GTAAGGAAATTTTTTTGTACCTCAGATTTTGTGATATTTTCTCATTGCACCAGAGAATGTTGTGTTGAAATGGAATGCTTTGGGAATGATTGAGAGGTTCTGAATGCATTTGTACATCTTACTGTAATGAAAGTGATTCTTAAAGTAATTCACTCAGAAGTAAGAGGCATGAAAATGAAAAAGAATGAAATAGCATAATTTTATATACCTGCATAGCAAGCAAATGCATGCATCTCTATACTGAATAACAGTAATGTTAAATTGCTAAATCTGTTTCAGAATCCAGAATTAGGGTAGTCAACTTTCTAAACTCTGCATATTTTTCATATCCTATTTAGAATTTTTTCTTTTCTTTGAAGTTTTGGCCACCATTTAAATGTATTTCCTAATTCTCAGCCAGTAATCTGCTAGCTTTTACTTTGTTTTCCGCACCATATATTATGGAAATGTAGCGTAGCCTTTTGGATTACATTGTCAACTCTGAAATATCTTTTTGTCAGTCTCAGAGATTATCTGAGTTTCTCACTGCCTAGGATCAGGGTCTAATTAAACAATATTACATGCAAATTCATCACTTTTTCCCTCTGGTCAGTCTTCTGTTTTGCCTGAATCTGCTTTTATGAATGGAGCAGAGGGTTTGGTTCTGGAAGCAAAGAAGTTTTAACTGGGTTCCAGCATCTGATTATACGTCAGCCAGATTACTTAAAGTTACAGCCTTCTTGAACTCTCTTTATACTTTCATAAGTATGGGGGGGGTCAGATAGGTCAGTCTTCTGTGATTTCTTATCTTGAAATTCGTAAAATCAATCAGAGATTATAGCTGTTCGATGTATAGGTATCTTTAGTTTTTAAGAACAAGGTCCAGGATGATTCATAGAAGTTACTTTTAGAGAATAGTTGTTATTGCAGAAACTTCCTTACATAAACCACTTCCTTTAAGTATCTTGTGATCAAACTGGTTTGGAATTGAAGTATTGATAAAACATGAAAATGGGAATGCTGATTTTTTTCTGGTTCCCATGCTGTAACAGGTTTGATTTGTTTCTGTGGCGATGATCTCCAAAATTTACTTGTGTCTAATATGAAGTTAATGGTAATTAATTATAATACAATAGTGATTTAAAATTAAATATCAAAACTGTTTTCTAGTATTTTATAAGGTACTTAACAGTATTCAGAAGTGTAATATGAAAATACCCACTTAAAAAACAAACAATAGGTTTATGTTACAGCGGAAAAAATTCTAATGTAATAGCACAAACAGGAAGTTGCATATTTTTATGAATTTATTGAAACTGAAGAGTCTTTCTGATACTTATTCTATCAGCATTTCTAAAGGTGAATTTAGTTTATCCCCCTCCTTTACATAATTTTTTTTGTTTGTTTCATAG
Seq C2 exon
AGTACTACTACAGAAATGGAAATAAAAAAGAGACGTTCAAGCTCATATCAAATACCAATGGATTTGCTGGAGGATCCCAATCTAAGACAGAGAGCCATGAGTATAGCTGGCATTATCACAAATACAATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027793:ENSGALT00000017809:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=NA C2=0.244
Domain overlap (PFAM):
C1:
PF0310514=SPX=PD(38.7=67.7),PF119333=DUF3451=FE(53.4=100)
A:
NA
C2:
PF119333=DUF3451=PD(15.3=80.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGATGATGAACACAGCACA
R:
TGGGATCCTCCAGCAAATCCA
Band lengths:
353-1744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]