GgaINT1009429 @ galGal4
Intron Retention
Gene
ENSGALG00000011164 | CHN2
Description
chimerin 2 [Source:HGNC Symbol;Acc:HGNC:1944]
Coordinates
chr2:34268512-34275260:+
Coord C1 exon
chr2:34268512-34268589
Coord A exon
chr2:34268590-34275175
Coord C2 exon
chr2:34275176-34275260
Length
6586 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
CTCCCTCCTTTATGTTGCAGGTC
3' ss Score
12.28
Exon sequences
Seq C1 exon
ATCACCTCCTTGGTCCGAAGAGCAGCCTTAACTCAAAACGACAACCATTTCAACTATGAAAAAGCACACAATTTTAAG
Seq A exon
GTAAGCACGACTTCCTATTATTCACAGCTGAAAAGTTATGTTTTGATACCTCTTGATTTAGGGCTTATTTTTTTTCTGTGGATTTTCAGGCAACCATCTGTACAAGCTCTGAGGAAACTGTTGAAAAATATGCTTTTTTTCTCTCTAAAGTTCTGCTGACTGCATTCCTAATGTGCTTTCACATAGCTACTTAATCCAAGTAATGGTTTTGCTGCTTGCTTGACTACTTGATTGGTATATTAGTTCTTTTTATTGTTCAGACAGAAAGGATGCCTCATATTGATTGTCATTACCTTATCTAAATGGCAAAAATGCAGCTGCTACCAGAAGCCACCAGCACTTTATCAGCAACATTCTGTACCCCTTCTGCTTTGAAGAAGTTGAGAGTGCTCTGGTGCTCACCCATACAGCAGAGTGCTGAGGGGTTTTGTCTCCCACCTTTTGTTCCAGCACCATATGCTAAGGACATGCTCTTACTCTAGAGTCCCACTGAGCCATGGGACCTGAGCTTGTGCTTGCTTGCCACACGAAAGCATGTGGCTGGACAAAGCTGGGGATGTTCAGGCATAGCATCTTACTGCTGTCTGATGCAGACAAAATCAGATTTTTCGCTTTTTCCCAAGAGGAGCAGGGAAGTGACTCAGCTTTGGAAATGGACTTCCAGGCAGCTTAAGCTGTTTTGCCAGAGGACAGTGCTCTTCCAGAGCGTGCCAGCCAGTTACTGTATCTAATATCGTCAGACTGTGGTTTGATGGTTATCAGAATGGATACAGAGGGACTGAGAGGCGGTAACACCGCAAGAGAGGACTGCATCTCAGCTTTGAAACCTCAGTTTGCTTCATGTTCCTTGAGGATGCTGATGTGGGTCACTGTCAGAGCATTTCAACTCATTAGCAGGAAGAAAATGTACTGATATTCATCTCTGGCCTGTCAAAAAAGGAGAAGCACTAATGAAAATGATTTCACTGATTTTGTGGTTTAGCAAAAAAGCTCTACTTCTTGTTCTTCTGTGTGCTCTTCCATGCAGATATTGCTCTCCTCTGCAGTGCTTCTGCTGCAGTTAGTAAATCAATAATTTAATATTAGTGAGCAACACAAATAATAGCTTCCCTCTTCTCATTCCTCCTCCTCAACCCAGTCTACAGAAAAGTCAATACTTATTTCACTGATTCACACAGTAGGAAATAGCGGAAATACTCTGTGTTGCCTTGCTTGATTAAAACATCTTTCATTCTTTCTGGGTTTTGCCCTCATTATCATTTTAATATCAAAACTATTTTAGTTTAACAAGAAAATATTTTCTCATGGATGAGAGTTTTTTCCACTTTGACCCATGCATTCTTTCCTCTTCAAAATTCCCCTTGTTTTGGCTTTGATTTATAACTGGAAGTGTGCCCAGTTAACTTTGTGTTTGCACAATCTAGCTGTTGTACAGCCTCTATTCCTTTCTGTTTCAGAAGAGTCATAGTTTTAACTGGAAAATCACATGATTAAAGATGTATGCATTTAAAAGCTTGACAACAGAAAAACTGTTGGTTTCTCCCAGTAAAAGGACACAAAAATCTCAGGAAAGGAACATTAAAAAACATACGTTGTCAAGAAAGAAAGGGCAGTCAGAATTGTTATATTTACTTAAGGAACAAATGTATTCACTATGCAAATAAAGTTAGTTTTCCAAAAGAATGTCTTAAAACATGTCTAGTTGCTGAGCAAAAAATGTAGAAAGAATGCTTAGAGTAGAATATTTGGATTTAAAGGACAGATAAGTTCAAGTCTGTCTTTAGCATAAACTCATATTAATTGGAAAAAAATATTAAGAAATTATATAAAAGAGAAAGAATGGCTTTATGGGACTTGGAGCAAAATTCTTGATGGCATTCTGGGAAATATGCAATTTTTCTGAAGGAGAATGCTATTTTGCAGACATTCAGAGTCATTTTCTGAGTTTTTAGGTGAATACTGCCATGTATTGCATAATTCACTTCAGTTATAGAGACAAAGCTTACATATCACAGCGTTCAACTGAACCTTGTCATGGGCTGCTCTTCATGGACAAACAGAAACTCTGTAGCTCTTTTTCTTTGGTCTTGAAGAATCTTGAGTAAGTCCAAAATTCAAGTTAAACTGATGGATCTTATATCTACCAGGATCTCCCTCCAGCCTTTACAACCAGTACAGAAATTTAAAAGGACCGCAGGAGTTTGGGCAGTGAGGGCACTGGGTTATCCCATTCTGAGCGTCTCTGCTTTCTAATTCAGACTCTTTTCCAAATTTCAAAGCACTCGGGGCAAATGAACAGAAAAAATAGATGTAGAATTCAGCCTGATTTGTTAACCTAGGTTTGTCCTATGTGCAAAACACGATCACATGGATTTAGATTTGGAGCTGGCGTCTGTCTGGCGGGACAACTTTGCATAAGCCGGGGTAGACATACCATAACTCAGGAAGAAGAATAAATCTCTGAAGCCCTGTTTATAAAAACACAGAGGTATTTCTGTAACTGTGTGGGTTTCAGCCTAACTTTGTTGCAGAGTAGCCTTGTATCTCAACATTATTTGGATCTAGCAGACTTTGGCATGTTTTTACCCACCAGTGTCAGTGACAAGGTCAGGCTTGTGCCTGAGGGCAGTTGTCTGGAGTTTGGGGATGCTCAGTATAGAATCACTGAATCATAGAACTGTTAAGATTGGAAAAGACCTCTGAAACCATCAATCCAACCATCAGCCCATCCTGACCATGCCCACTGAGCCATGTCTCTCCTAGGAATTCATGACAGGGGCTCTGTGATGTTTTAAGGGAGCAAATATAGCTGAATAATGTGTTTTTACTGCAATATTGCTCCTGTTTGCCATGATAGCACGGGCAAACCTCACAGCAGGATTTGCTACTAGAGCAAAGGCAGTTGATTACTTGCAAGTCAGGAACTCTGCTGGGAGATAGGAAGCTCTGGGTTAAATTCCCCCCTTGTGTTAATCACTGCAGACAAACACTGCTTCTGGGAAACAAAAGGGAGATATTTTTTAGAGGCATCACAAATATTATACATGTGTATCTGAACAAAAATTGCAGCAAAGTCAGCTTGTCTTCCCTGCAAACAGCTCCAGCTCAGCAGGAGTACAAAGTAGAGTACAAATTCACATGTGCTCAGGTGAGAGTCTGAAAGAAAACTATTTTCTTTGCCTGCAAATAGAAAAGTCTTAAACACAGTCACATAAACAACAAAATCATCTCAGGAGCAGCAGCATCTAATTCTCATTAAAACCATGCATTTCAATCCAGGACAATTTTTAGTTTCTTTGTATGATATTGCTAAGGGAGTTATTTTTTCTTGCCACTGCACTGGAATTCCTTCACCTTGGTCTTAATTTCTCCCTCTGTGAACACAGTTCATGTAAAACCTCAGGCACAGACTAAAACTTAGTGAGACAGACAGTGCCTGTGGGGAAGCTCTTCCATTTGGAAACAAGGACACCAGAGAACTGAAGGGCAAAAGCAGGAGAGGAGGAAGGCAGTAGGAAAAGGCATGTAGGAGAATTTTGGGTAGCAACCCAAAGGTGGCTGGAAGAGAAGAGAAGGTGAATATAAGAAATAACGCTTTGTTGAAAGTCGTAGAGATGGACAGGAAACAGAATGAATAAATGAGACTTTTGAGAAAAGAAGATGAGGGATTGAACAGGAAAAGTACAGTTTTGTCTTCTATGAAGAAATAATTGTTGTAAATTGACTTCTTCATAGATGGTAGTAAAATCAGCCCAAGCCTATGCAGTGTGTATTCAGAAAAGCCACCCAGTACTGCAGAATGGAGTGGCAACATTAATTAGGTCTTCGCCATTTTCTCAAAAATCTAAGTCCAGTCCATTTGTAGGGATACGGTTGCAAAGAATAGGGCAAAAACTAAAGACCCATCTCAAAAACTTGAAGACACTTCACACAGAGGATGGTGATGCACTGGAACAGGTTGCACAAGGAGGTTGTGGATGCCCCATCCCTGGAGGCATTCAAGGCCAGGCTGGATGTGGCTCTGGGCAGCCTGGTCTGGTGGTTGGTGACCCTGCACATAGCAAGCGGGTTGAAACTAGATGATCATTGTGGTCCTTTTCAACCCAGGCCGTTCTAAGACCTTCCATTATCTTTTCCTTGCAGGCCAAATTCCCACTTGCCACTTGAAGGTGCTAGATGCAAGCTTTGGGCTGAGTTCAAGTGATGAGTTCGCAAGGACAGGATTCCTTATTTCTTTAAAATTAGTGGCAAGACTCAAATAAGACACTTGGTTCTAATCTGCATCTTAGGAGATTTTTTGTATTTTCATCCAGAAACTTCTAAAAGTCTTCCTTTTTCAGTTGGAATAGGGAGTATTTTGCTGTTTCAGCCTGACCAGAAATCAGCAAGACTAGCTTTTCTCAGGGTATTTCAGCTGGGATCTTGCCATTTGAACTAAAATGCAGAGCCATGAAAAATTGAAGTGAATGCATAAATAGAGCTAGGCCTTTGAGGGCCACCAAGCCGAAGAAAACAAGGGCAGGGTGTGTGGTCAGCACTTCTCAGCTGGAGCCCTCCATGAGCTCTGAGGACTGCTTGCTGATAATGACAGCAGAAATCAAGGAATAATCAGCTCCCATTTTAATATGCCACGGCAAGATCAGCTGAAATAAGCTTTATGTAAAGTGAGCAAGTAGGCCGCAAATATCCTAGCAACTGAGAAGTGCTTCACGCGGAATGGAAGTGGTGCAGTTTTAGAAATACCAAGTGAGCTTTTCCAGCCCCTTCTCACAAGGTTAGCTTTTGTAAGCCATTGCGCAGTAGAAGATGAGGATAGCTGTCTTCCCTTAGCAGATGACTTCCACCGGCAATTAAATGCAGGTGCAGACCTACCAATTGCAGGGCTATCAGTCTAAAAACACAGTCTGTTGTTAGATGCTGCCACTAAAAGCCCTGCCTGAAATTTCATGCTACTTCCCATTCAAAACAGAAATAAATAAATGAGTGTATGATGTGTATATACGAGATATTTCAAACTTTATAGCAAGGTGCTGTTTCCCAGAGATGCACATTTTTTACTGAGAGGCAAAACAGTGTTTTAGACAATTTGACCCATCACATTTTCCAGCTGAGACTCTTTATGATCAAAAGGGAAGAAGAATTACTGTTGCTGTAAGCTCATCCACGTAATTATTGGATGTGCGTAATTGGTCTGGAGTAATTTGTGGTCAGGCTCTTTAAAGTAATAATACCACATTTTATCACTATGTCAGGAAGAGGGCTCTGTACTAAATTCACAGTATTTTCATGCTTGGGAGTACAGAGCTGTTTATCCACGATCCTGCAGACAACTGTGGCTAAAACATTAGCAATCCAAACGCTTGCCTTCAGACTTCACAAAGTTTACTTCAAGAAGGGCAACAGCCAATTTTTATTCTATGAAAAGAGCAACTTTCCCTTCCCATGGGCGGAAGCGCCTGTCAGCAATCCGCCCCATCAGTAAACACAAACACGTCTGAAGGAAAAGGAAGCATTAGCAGCCTGAGTGTGCATGATTTATGTTCTTCAATTAAGCCTCTGACCAGAACCGGCTCATACCACGTCCATTCACACAGACACAGACCTCACTATTTACTCTTCTTTTCAATGAAAGTGAAATGCTTACTTTACCAGAACATACATCTTAAACAAAACGCTTTTCCATACCAGCCTTTGCAAATGCTGCTTTGAGGAAGCAGCAATTGTGTGCAAAAACACTGATCTCTCAGCACCCAGGTTCCATTATTTCTCCTTATTTACTGATGTTTGTACTGCGGTAGAACATTTTCTGTACCAGGAAGGACCCCTGTGATATATTTTGCCTGCGTGAGTCCAGTTTACATACTGCAATGGGGAAAGATATAGTTTGCTTGTATCACTGATGGACTCCAGTGTGACAAATCAGATCTTTACCCAAGCACTGCCTGGAATGAGTGCACAAATCATTCCTTGTCATCCCCAATACAGTCACCCTGAGTTTTGGTCAGTGTTGTTGCGTGTAAATGCACAGGTAGCAGCATCATCAGAGACATGTGTGGTGCTCTCCTCATTCTGGCTTTGCACCTGATCTGTGGGTACGTGGCTTTGTGGGAAATCCAAATGGGTTGCTTTTGTGCCTCTTCTGTCACTTCACTGTTTCAAATGATCTGCTGAAGTATGTTTGAATCTCAGAAACATGCTTCGTTGGTTTGACCTCATCAAATAAAAGCACTGACTACAGTGCCTTGGATTATTAGTTTTACTTCTTTCTCCTCTGACTAACAAACCTGGTTTCCTCCTCTCTACTAGAACTAAAACGTCAGCTAACAAATATTGTTTGTTTTTAGTGTTACACACAGCCCGATTCTCTGTTACGTTAAGCCTATTGAAAGATAAACTTTGAGATCAAAGCAAATTTCTTTGCCTGTGGTTTATTTCATCTAGACTATGGAAAGATGTGGGCACTGTGTGGTAACGATTTGCTCCTACTGAGTCTTCTGTTGTTTATCCAGTTTAGTTGTTCCATCTGTCAGACCATCTGCCTCCCAGTGACCCCATTTCTTTTTTTTCTCCCTCCTTTATGTTGCAG
Seq C2 exon
GTCCACACGTTTCGAGGTCCACACTGGTGTGAATACTGTGCCAACTTCATGTGGGGTCTCATCGCTCAGGGAGTGAGGTGTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011164:ENSGALT00000018199:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0013017=C1_1=PU(5.7=11.5)
A:
NA
C2:
PF0013017=C1_1=FE(52.8=100),PF087466=zf-RING-like=PU(48.7=65.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]