GgaINT1015156 @ galGal4
Intron Retention
Gene
ENSGALG00000022565 | IDH2
Description
isocitrate dehydrogenase [Source:RefSeq peptide;Acc:NP_001026770]
Coordinates
chr10:19520641-19521019:-
Coord C1 exon
chr10:19520883-19521019
Coord A exon
chr10:19520793-19520882
Coord C2 exon
chr10:19520641-19520792
Length
90 bp
Sequences
Splice sites
5' ss Seq
TAAGTACGG
5' ss Score
2.1
3' ss Seq
CGCTGACCGCTGCGCTGCAGGCA
3' ss Score
4.28
Exon sequences
Seq C1 exon
TCCATCTCGGGCTTTGCGCACAGCTGCTTCCAGTACGCCATCCAGAAGAAGTGGCCGCTGTACATGAGCACGAAGAACACCATCCTCAAGGCCTACGACGGGCGCTTCAAGGACATCTTCCAGGAGATCTTCGATAA
Seq A exon
GTACGGAGCTGAGGGGGCGGCGTGGGGCCGGGCCGGGCCGTCGGGTGGGCGCCCTGTGCCGCTGCGGTGCCGCTGACCGCTGCGCTGCAG
Seq C2 exon
GCACTACAAGACGGAGTTCGACAAGCTGAAGATCTGGTACGAGCACCGGCTCATCGACGACATGGTGGCGCAGGTGCTCAAGTCCTCGGGCGGCTTCGTCTGGGCGTGTAAGAACTACGACGGTGACGTGCAGTCGGACATCCTGGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022565:ENSGALT00000036142:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0018015=Iso_dh=FE(11.3=100)
A:
NA
C2:
PF0018015=Iso_dh=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACACCATCCTCAAGGCCT
R:
GTTCTTACACGCCCAGACGAA
Band lengths:
179-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]