BtaINT0074560 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014093 | IDH2
Description
Bos taurus isocitrate dehydrogenase 2 (NADP+), mitochondrial (IDH2), mRNA. [Source:RefSeq mRNA;Acc:NM_175790]
Coordinates
chr21:21907771-21908240:-
Coord C1 exon
chr21:21908104-21908240
Coord A exon
chr21:21907923-21908103
Coord C2 exon
chr21:21907771-21907922
Length
181 bp
Sequences
Splice sites
5' ss Seq
GAAGTAATG
5' ss Score
0.91
3' ss Seq
ACAAGCCCTTTTGCTCCCAGGCA
3' ss Score
6.9
Exon sequences
Seq C1 exon
TCCATCTCAGGTTTTGCACACAGCTGCTTCCAGTATGCCATCCAGAAGAAGTGGCCACTCTACATGAGCACCAAGAACACCATCCTGAAAGCTTACGACGGGCGCTTCAAGGACATCTTCCAGGCCATCTTTGAGAA
Seq A exon
GTAATGGCTTCTCCCTTTACTGTTTCCCAGGGAGTCCATGACCCTCCTTCCTGGTCCGCTCAGTCTTACCCACCTGGGGAAGCTGTCCTAGTGTGTCTGTCTTGGCCCTGAGACTCAGGGAGGGATTCCCCAACCTGTCAGCCTCCTGCCCTCTCCTCACCACAAGCCCTTTTGCTCCCAG
Seq C2 exon
GCACTACAAGACTGAGTTCGACAAACATAAGATCTGGTACGAGCACCGGCTCATTGATGACATGGTGGCTCAGGTCCTCAAGTCCTCAGGCGGCTTTGTGTGGGCCTGCAAGAACTACGATGGAGACGTGCAGTCGGACATCCTGGCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014093:ENSBTAT00000018741:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0018015=Iso_dh=FE(11.3=100)
A:
NA
C2:
PF0018015=Iso_dh=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGCTGCTTCCAGTATGC
R:
ACTGCACGTCTCCATCGTAGT
Band lengths:
254-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]