GgaINT1020806 @ galGal4
Intron Retention
Gene
ENSGALG00000003429 | PBX1A
Description
pre-B-cell leukemia transcription factor 1 [Source:RefSeq peptide;Acc:NP_990077]
Coordinates
chr8:5190327-5196980:-
Coord C1 exon
chr8:5196891-5196980
Coord A exon
chr8:5190802-5196890
Coord C2 exon
chr8:5190327-5190801
Length
6089 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
3' ss Seq
GCCTGTCTCTCTCCCCTCAGGCT
3' ss Score
12.25
Exon sequences
Seq C1 exon
GTGGATACCCTTCGCCATGTTATCAGCCAGACAGGAGGATACAGTGACGGACTCGCAGCAAGTCAGATGTATAGTCCGCAGGGCATCAGT
Seq A exon
GTAAGAAAAAAAAAATAGGCTTGGGTTCTTGTTTTATTTTTTTCCCTCCCTTTCATTTTTGTTCTCTCACTACCAATTATTTCAAAGCCATAGGGCTCAGAATGCCACTTAGTAGGACTTGTCTTTGCTTTTACGGTCACCTAGTTTATTGCTTCTGTATCGGTCACGCCAACGGCAGAGCTTTGCCCACGAAAAAAAGTGGCGACTGGGCAGGCTCTGTGCAGGCAGCTGGCGTCTAGGACTGTCAGAGCCGATCAGCGTTCGCGTGGCACCTGCGGCCACATGCGTTCGGCTGAGAGGAACTGCTAAACAGGTGACACCTCGCGTAACCGCGGTGGGGAATGTCACCACGAGCGCCCTGGCCCAGAGATGGCTCCACGCCGAAGAGGCTGATGGTGGCATCCTGCAGTGGCTGCCTAAAAATAACCCATCCCTGGCCAGCATCTGAAGCCGGGCTGAGCGGGCGGGAGGGGGCTGAAAGCACGGCGGTGATGGGGTTGACGGCGGTAATGGTCATAAATGGAATGAGAAGGGGAAAAAAACAAGCGCAACCCAAGAAAACCTCGCCCAACCGAACTGGGGGAGGATGCGAGGGGGAGGGAGGGCTTTGGAGCATCTTCTCCTTGTTCTTGGGTGCGCTGGCGGGTTCTGACTAGCATGAAAATTCGTAGCGACAAGCTGTGTCGTACAGGGTGAAATCGATCAGACACACACAAGGAGAACCGAGTGTAGATTCGGGACAGCAATCCAACTTCATTTCTCAGATCAATCGTCCACCATCTCAGCGGCGGTGACAGCAAGCTGGGAGAAGAGGGCAGCCTGGAAAAGGAGGCTGTGCTCGCGGAGTGGGTGGTGGTGGTGGTGGTGGTGGCCGGGCTGGCGAGGGGAGGAGGATGGCTGTGGCCCATGGTCTGTGTGCGCCACAACCCCATTGGGTGGCAAGGAGGATGAAGGTTGAGGCGGGGTAGTCTTGGGCTGCTCAGGGAAGTGGTGGGTGCCATGTTGTGTTTTGCTGCCTGTGTAGCTCACGGGAAGACTGAGAGAGTATTGTCTTTGGGGAGAGGGGGTCAGGCCCAACCTTGGCTTTGGGCTTGGGCCAACAGCAGCATGGGCTGCTCCGGCAAAATGCCGCCTGTGGCGAGGCGGCCAAGGGATGCCCAGGGAGCTCCTGCTCTGCCAGCCGGCGTCTGTGGCTTCCTGTCAGCTTGAAACAAAGGCGCTGAGATGGAGACGTGATACATGAGGAGGCATTAAAAGAGCTTCCTCGCAGCCTCCAGCCCTTCCCTGCCTCTGCCTTTCATTCAGGGACGGGAGAACATGGCCTCAGCTGCCAACCACAGGGCACCTCGCCCTGCCACATCTCCCTTCGAGTCCCTTCACCCTCCAAGGAGACCACTCTCCAAGGAGGCTTTGCCATTCGGCACCTTGCATCTGACCAACTTGGGGCCCTTGGTGTCTGAACGACCACTGCTGACATGGGGAGACCCCGGGGGTGGAGGAAGAAGGGGCTGCAGGATGGGGGCTGCGCTCCCTGCTCTGCCGGGTGCTGGGGCTTAGCGGGCAGCTTGACGTCACGAGGCAGAGCCAGGGAGGATTTGTGAAGTAATGTAATTGAACATGTGCAGATAATTATGTCTCATTACATAAGCCCGTTGCAAAAACGGTGCTTGGAAATGCCACATGAAAGAGCCTATCGTTCCGCATTAATTTCTCTGTGCGCTGAATTTATTCCCTTTCTGGCTTTTTAATACTTGAAGAGTAAATGAATCGGAGGCTGATCATGATAAGAGATGATACTTTTGTATAAATTAAAATACCCCCAAGGAAAGAGGCTGAGCTGATTATGGTTGCAGTTGGCTTGGAAAATAACAGCGGGCTGGGTTAAGCCAAAATTTCGGGGGGGGGAGGGTTGCTGATGGGGATTTCAAGGCAGGGAGGGGGACAAGGGGAGAGGGGAGAAGAAAGAAGGAGTGGAAACTTGAAAGCCAGTAGGACGTCAGCGGATGGACTGGTATTTCTGGCAGCCAATGGTGGTCGTAATGGGAGCAGCAGTGGGAGTTGGTGAGCTGACGGCCACAGCTTCCCAAACGGTGACCCAAGATGAGTGGCATGTGGTGTTGGCTGGTTTCTAGGAGAGCAGGAACCCAAAGTTGCTTAAAAGGGTCAGGCTCGTGAAGGATGAGGATCAGAGACAGGCAGGGAGGCAAGTGGGTAAGCAACCCACCCAGTTTGGGGGAGACTCCTTATCTAGCTAGCGTGTTTCCCCATATAGCATCTGGAACCAGCCTAGAAGAGAATAGAAGGTTTAGGAAGCATCTTCTGGGTTGCCTTTCTTTCCCCAGACCCTTTGCTTGCGATATCATGTCTTCTCATCCATCTGGATCCCAAAGCATTCGGCAGCCCCCAGCTGACTGATCTGCCACCCCTGCAGCATGGCTGCCTTCTGGGACGTGCTGGTGCTGGGTGAGGTCCCAGGTTGGTCTGTGTAGGCAGGGGCTGTCTCATAGCCAGAGCAGTGGGCACATTTTCCCTGCCTCTCCTCAACCCCTTTAAAGCTGCAGAAATGAAGCGGGATGCAGAGGAAAGCTGCCAGCAACGCAGAGAGCTGCGATCCCTGCCTAACCCGAGCATCCCTGGGAGCTGCTGGAAGGAGATGAGCCGAAACCGAGTCAAGAGCCCTGTCACAAAGATCTCTGCACGGGGCTGAGGTTAAGTCATCCCTGGAGCCCGTCAGGTCTGGGAAGGCAGCAGCAGGTTGCCCAGCTCCACCGCTGTAAAGCTTGGCAGGGGAGACAACACACAGGGCTCGCCTTCCTCGGTGGAAGATGAATTTTTAAACGCATGCACGTCGTGACAGCTGAGGACAGAAATACACCCAGAGCCCAATTTCCTCCGTGGTTCTTCTGTGAGCCTGTCTTGTGGTTGCAGCTGCTCAGCAGCTGACAGCCCACCCGGCGCTGTCTGTGCATCGTTAGCGGGATGATCAGCCATGTCCCTGCCACTGGATCTCCGTGACCTGCAGCGATGGCTGAGGCAGAGCGAAAACAGCCGGCCTCACATCTCTAGGTGGAGATGGTGTTGGACAGCGCATCCCCACCAGGTCTCTTTTGGCTTCGGTGGGTTAGGACTCAAGCCCTCGTTGACCACATCTGGAAAGAGGATGTCCCTGTATGTGTCCTCTTTGCCGTGTGCACAGGGAGCTCTGTGCTTGCTCCCGTGGATCTGCCTGTAAACACGCTGTTAATGCAGACTGGGTTGCTGCAGTGACTCTGATCAGTCTGCTAATTAACTAATGATTTATAGTCATCTTAAAGAAAAATCCTGTCAGAAATATCTTTTTGGACACCCAGCTCCTCCTTTCCTTCTCCCCTTTGTGCCCTCCATCCCTCACCCTCTAATGAAGAAAAGCGAGCAGGCTAGTTTATAAATCATTGAAAAAGTCTTAACACGAGAGGCTATTTTTAAGATCGGTCATTGTGCAGTTTTGATGTAAAAACGCTGTTCTGCCTATTTACAGAGCAGTGTTTGCCATTGTGATTGTGGTGCTCCATAGCACAATGGTTGTACATCCACGCCTACCAACTGGGAGCGAGGACCACAGGGACCTTCAGTGGCCATGCTGTCTGTAGGAGGTGAGACCCCCAGCAGCTCAGGCTCAGGCTGTCCAGGGCCCCATCCAACCTGCCCTTGGGCAACTCCAGGAATGGGGCACCCACAGCTCTGGGCAGCAGTGCCAGCGCCTCAACACTCTCTACATGCTCTTTGAAGCCTGTTCCCCTCTGTCAGACTTGGTGTCTGGTTTGTTGGGAGGCTGACCTGACATCCTGGCCAGTTGCTGGTGGGACAAGGATTTGGCCACGTACAGCAGGATGTGGCGACAGGCTTCGTGCGAAGCTGCAAGCTCCTTGAAGAACTGGCAGAAAATCAGCCCCATGCAGGAGGCCGGGCTGGGAGCCAGCCAGACTTGCTGGAGGAAAAATGCCATGAGACCTGCAGAAACCGGCCCCAAACCCAGTTACTTCAGCAATCCATCACCCTGGCTCTACGCTTGGACAACCACCAAGGCCGCGGCAGTGCTCTGGCACCAGAAGGTGACATTTGAAGAGACGTCCTGGAGACCATTGCAGTGTGCCTGGCTGCGTCCCCCCTGCAGAAGTCAGAGCTGTGTGCGGGGCTCCTCACAAGGCCTCCTCCTGTCCATCACTTGGGCTGTAATTTGGGGCTGCTCCGGCTGGAGGAATGGGAGGTTGTGATGTGTGGGGCACCTTCAAGGCCAAACCTATGGGAGCAGAGGTCAGCACCTCCCCAACAGCATCTCCTCTTCCCACTAGGTGGGGTTGAGGTGACAATCAGGGCACAAAACCACCTTTTCTTCCATAGGTGAAGGCTGGTTCCCAGTCTTGAGGCCAGAAGGGCTGCCCAGTGTTTTGGGGGGACGGGGAGGGAGGTGCTGGACATGGAGGCACCGCAGCCGTTGTCTGCAAGATGTTCTCCTCCTCACTCCTTTCAGCCACGGCAAGCATGAAAAAGCCTCTAAAAATAGTGCAACACAATAGGGACCGAGCCCTGCTCCGAGCGGCCCCCGCCGCCTCTCCCCCCTTCTGCTCGCTGTAATGACCCTGCAAACACTAAATGGCATCTGAGTGCATTAAGCAGCAAACTCTCCGGTGACATAGCAATTACGGCTCTGAAATAGATTTGGTGCGTCACGGAAGATAAGGGTTTTGAAAGTTTCTGTTGTGATTATAGCTTGTAACTCCAACAAATAACAGGCTTCGTAATAAGAGGCTGCCAGCGCCGCTATTGTGGTTCTCTCTCACTGATGGCACGTAAATTGCTATTAATGTCCTAAGTGTACTTGAATATGCCAGTCTCTGGGCGGCGGAGTTGGCTCTGTGTCTCTCTCTACGCGGCCTGTCATTGTGGGGCTGATAATCTACGGTAATTGCTGCCTCTTGCAGTGGACCAAGACGTGGAGAAGGGTGGGTGCTGCGTCCTGGGAAGCAAGATGTGCAGTGGGGCCGCAGTGGGCGCATGCGAGGTTGTGGGTGAGACCGTATGTCCCCCAAACATCCCTGTGTCCCCCTCCCACGAGGTCCCGTGTGGGACTTTTGGGCCCAGTGATGGATGCCCTAGAGCAGGAGGCACAGGGATGGCTAGAGCAGGCAAAGCAGCCTGGGCACGTCCAAAGCGGGATTGCTGCTGCTGCTGGCTCAGCACAGGCAGGAGTTGGGGTGGATTAATTAGCCGAGCACTGAATCAATGTCAGAGTGAGCAGGGGAGGTGGGGGCAACATCTGCTCCTCTCCAAAGGGGTCGGCAGCCAGAGAAGAGCAGCTTCTGTGAGCTGTCGTGCTTGGCAGCCAGGGCCCTGCGGCCAGCTCTGCCCTGCGGAGATGTGGGGCTTTGCATGGGAAAGCACCCATTGGCTCTGGGAGGAAAGCATTGCCTGCCTTTGCTGTGTGACCCCTTAGATGAGGAGGATGCTCAGTTGCACCTCTGGGTGGGCTGATCTGCTGCCAGCTGTGGTAGGACAGCGCTGCAGGACTTCGGGGCAGCGTCAGGACCGGTGTATGTGGTGCAAGTAGGAGCTCCAGGTTGGATGTCCACTGAGCCTGAGGAAGCCGCGGGATGTGGACACTCATAGGTCCCTCGTGTGCTGGTGTACAGCACTTGTTCTGCATTTTCATAGCACTTGGGTCCAGATGGAGTTCCAGGAAGGGGTTTTAAGTTCAAAAAACAAAGTTGTTCAGTTGTTTGCTATTTTCCCCTTCTATTGGGAAGGATCCTATCATACAGTTAAAAGCCAACAGAGTTCAGGATTTCTTCAAAAAACTATACTTATTTTAAAGAGCGGAATTTCCATGAAGGCTTGAAATTCATCAAAACCTCCAGCTTTCATCAGTGCTATCCTGAGCTGTTCTTGTACTTTGGCTGTCCACAGTGGGATGGGGGTGGCAGAGCAGGGGATACTTACCCTCCATCCCTAACACCACTCTATTATCTGAATGGAGACCTGGGATGGGCAGAGACCTTGCAGTGGGGCTCTGTGCTGCCATGACTGACGGTTGCCTGTCTCTCTCCCCTCAG
Seq C2 exon
GCTAATGGAGGTTGGCAAGACGCTACTACCCCATCGTCGGTGACCTCCCCCACAGAAGGCCCTGGCAGCGTTCACTCTGATACCTCCAACTGATCTCCCAGCAAATTGCATCCCTGGCTGAGCCAGCCCCGGCGGGGCGGGAGGGGAGGGGGCCTCTCCTAACACCGCAGCAGTCAGACTGGAGGTGAAACCAATCAGCACACAGAAGAAGACTCCTTCTCTTCTCTTCGTCGGGATGCTTTTTTCAGCCAATCTGGACACTTCTTTATACTCTCTTCCCTTTCTTTTCTGGGTAGAAGCCGCTCTCCCCCCCCTTGCCGCCGCCGCCACAACACCTCCCTCCCTCCACCTCCCCACCGAAGGATATTTCGACAGCTAGAAGGATCTTAAGGAGGAAAAGCAAAAAACAACCACCGCCACGCCAACTGAACCAAAAGCAGTGCATGGCCTCGCACTGAGCCAAAACCATACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003429:ENSGALT00000021887:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.688 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]