GgaINT1022683 @ galGal4
Intron Retention
Gene
ENSGALG00000012526 | PRPF40A
Description
PRP40 pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
Coordinates
chr7:35052324-35053124:-
Coord C1 exon
chr7:35053029-35053124
Coord A exon
chr7:35052411-35053028
Coord C2 exon
chr7:35052324-35052410
Length
618 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATT
5' ss Score
8.88
3' ss Seq
CTTTTCATGTTGTGCTCCAGCAT
3' ss Score
7.6
Exon sequences
Seq C1 exon
ATCAGAGATAGATTTGTGAAGGAACCAGCATTTGAAGACATCACTCTGGAGTCTGAAAGGAAAAGAATATTTAAAGATTTCATGCATGTACTTGAG
Seq A exon
GTAATTCTTATTTTTTCCTGATGAGAGAATATACGGTACACAGTACTTAGTTGATTGGTTCTTAAATCATACAGAAAGGGAGATTCTGCATTTGTTTGTTTGATTTTGACTGTGAATGTGAACAGTTCATTGGTGCTGTGTAGGAGGGTTATAATGTAGTTTCACCTTAACTTTTGGATCAGCCACAGGAAGAGTTGATTTGCAGAAATCTTGGCAAGTCAGTCTTGTTCAGAAAGGTGTTATCCCTTCATAGGTAATGAGATATAATGTTCGTTTGTTTTACTCACTGCAGTTTGTAGATGATAAAATGGTTTAATTTCACAGTTCTGAATGTTGCAAAGCAAGGTTTGCACTCTATTCTTGGTCAGCCTGAGCAATCACTTCAAATAGGAAGCACTGAAGCAAGGATATGGCTAACAGAAGCTGCGTACATCCATGCCTGAAGCTGTCTGTTCCCTTGCTACTAAATGCTTGTTATAACTTTCACGTGGCACTACTGTTAGTAATACTGTTTTTTAATCACTGCTAGCTATAGGTGCCCTGTGGGTGATGAGAGATGTCATTGGTTTCATGGTGTGCCCTGCAGACTAACATTTGTCTTTTCATGTTGTGCTCCAG
Seq C2 exon
CATGAGTGTCAGCATCACCATTCAAAGAACAAGAAACATTCTAAGAAATCCAAGAAGCACCACAGGAAGCGCTCTCGCTCTCGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012526:ENSGALT00000020462:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0184614=FF=PD(50.0=81.2)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]