GgaINT1022688 @ galGal4
Intron Retention
Gene
ENSGALG00000012526 | PRPF40A
Description
PRP40 pre-mRNA processing factor 40 homolog A [Source:HGNC Symbol;Acc:HGNC:16463]
Coordinates
chr7:35060553-35060798:-
Coord C1 exon
chr7:35060669-35060798
Coord A exon
chr7:35060569-35060668
Coord C2 exon
chr7:35060553-35060568
Length
100 bp
Sequences
Splice sites
5' ss Seq
TCTGTGACA
5' ss Score
-5.99
3' ss Seq
ACACATCTGTTAGGCATTAGCCA
3' ss Score
-6.51
Exon sequences
Seq C1 exon
CAATTGCTGTCTAAGTGCCCCTGGAAAGAGTACAAATCTGATTCTGGAAAGCCATACTACTATAATTCCCAAACAAAGGAATCACGCTGGGCAAAACCCAAAGAACTCGAAGACCTGGAAGGTAACATCT
Seq A exon
GTGACAAGGATGGGCAGAGGGGATGGCAGGGGATTGCAAGCTGTGTTGTAGCAAAAATTTGTTATCAAAGCATAGGAGTTACACATCTGTTAGGCATTAG
Seq C2 exon
CCATGCACAGTAGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012526:ENSGALT00000020462:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.771 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0039721=WW=WD(100=68.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]