GgaINT1031379 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr17:8217146-8217520:-
Coord C1 exon
chr17:8217392-8217520
Coord A exon
chr17:8217167-8217391
Coord C2 exon
chr17:8217146-8217166
Length
225 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGG
5' ss Score
2.53
3' ss Seq
TTTTCTTCCCCCAAATGCAGCCC
3' ss Score
8.47
Exon sequences
Seq C1 exon
ATGAAGATCACGGAGGACGACCTGTGGATCCGGACCTACGGGCGCCTCTTCCAGAAGCTCTGCTCCTCCAGCGCTGAGATCCCCATCGGCATTTACCGGACGGAGTCGCACATGTTCGCCACCTCCGAG
Seq A exon
GCAAGGGGCAGCACGTGTGGGAAGGGCAGCAGCATTCCCACCCCGACCCACACCCCGGGGGGCCTCCTGTCTGTGTGTGAGCGTGGTGCAAATGCTCAGCCCTCAAAGAGCAGTGCGGGCCAGCACTGCAGCACTGAGCGGTTGTTGAATTACCAGGGGATGCTGCACAGGGGATGCTCATTCCCTGGCTGACAGTTTTTTCCCCTTTTCTTCCCCCAAATGCAG
Seq C2 exon
CCCCATGACATCAGAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645:ENSGALT00000038919:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTGTGGATCCGGACCTAC
R:
CTGTGCTCTGATGTCATGGGG
Band lengths:
132-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]