RnoINT0078058 @ rn6
Intron Retention
Gene
ENSRNOG00000017283 | Kcnt1
Description
potassium sodium-activated channel subfamily T member 1 [Source:RGD Symbol;Acc:621106]
Coordinates
chr3:3357270-3357749:+
Coord C1 exon
chr3:3357270-3357395
Coord A exon
chr3:3357396-3357728
Coord C2 exon
chr3:3357729-3357749
Length
333 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
ACCCTTGGTTTTCTTTACAGCCT
3' ss Score
9.72
Exon sequences
Seq C1 exon
ATGAAGGTAACTGAGGATGACCTGTGGATCCGTACTTATGGCCGCCTCTTCCAGAAACTCTGCTCCTCCAGCGCTGAGATCCCCATCGGCATCTACAGGACCGAGTGCCATGTCTTCTCCTCTGAG
Seq A exon
GTACAGTCCCAGGGCCGTAGAGTTTCCATCCTTATGGTCCAGTGCTAAGGAGCTGGGTGTGGCTGATGTGTGCCATGGGCTCCTTCCGGGTGGTTCAGTGTCTAAAACATGTGCCTCCAGGGAGGGTAGCTGCCACTCTGGGAAGAATGGTGACCTTGGAAACACCCCAGAGCTCCAGGGGGGCTGGGCAGGGTGTTGAGGGCAGTCTGGTACAGCTAGCCTCCCGACATCCCGCCCTCAGCACGTCATGTGTGGACCTTGAGAGGCTGTGGTGCACTGAGGTAGAGGTGAACACACTCACGGGCCCCACGCAACCCTTGGTTTTCTTTACAG
Seq C2 exon
CCTCATGACCTCAGAGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017283:ENSRNOT00000023542:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]