HsaEX0015252 @ hg19
Exon Skipping
Gene
ENSG00000106069 | CHN2
Description
chimerin (chimaerin) 2 [Source:HGNC Symbol;Acc:1944]
Coordinates
chr7:29394241-29433326:+
Coord C1 exon
chr7:29394241-29394279
Coord A exon
chr7:29407548-29407603
Coord C2 exon
chr7:29433295-29433326
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTTTTTTGGCAGTAT
3' ss Score
8.3
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ATGCTGAAGAATACCAGCCTCCTATATGGAAATCATACT
Seq A exon
TATATCAGTTACAGCAAGAGGCACCTCGTCCCAAGAGAATCATTTGTCCTCGGGAG
Seq C2 exon
GTGGAAAACAGACCAAAATATTATGGAAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106069-'14-20,'14-16,16-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.144 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAAGAATACCAGCCTCCT
R:
TCCATAATATTTTGGTCTGTTTTCCA
Band lengths:
65-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)