DreEX0021648 @ danRer10
Exon Skipping
Gene
ENSDARG00000011845 | chn2
Description
chimerin 2 [Source:ZFIN;Acc:ZDB-GENE-091020-5]
Coordinates
chr16:20606939-20629656:-
Coord C1 exon
chr16:20629618-20629656
Coord A exon
chr16:20607199-20607254
Coord C2 exon
chr16:20606939-20606970
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTATTATTTTTGTTCACCAGTGT
3' ss Score
7.43
5' ss Seq
GAGGTAAGT
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATCCTGAAGATTATCAGCCACCAATATGGAAGTCCTACT
Seq A exon
TGTACCAGCTACAGCAGGAAGCACCGAGACCAAAGAGGATCACATGTCCTCAGGAG
Seq C2 exon
ATGGAAAGCAGACCGAAATACTATGGTAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011845-'1-2,'1-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.456 C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGAAGATTATCAGCCACCA
R:
TCTCTACCATAGTATTTCGGTCTGCT
Band lengths:
70-126
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]