HsaEX0015252 @ hg38
Exon Skipping
Gene
ENSG00000106069 | CHN2
Description
chimerin 2 [Source:HGNC Symbol;Acc:HGNC:1944]
Coordinates
chr7:29354625-29393710:+
Coord C1 exon
chr7:29354625-29354663
Coord A exon
chr7:29367932-29367987
Coord C2 exon
chr7:29393679-29393710
Length
56 bp
Sequences
Splice sites
3' ss Seq
CTCTCTCTCTTTTTTGGCAGTAT
3' ss Score
8.3
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ATGCTGAAGAATACCAGCCTCCTATATGGAAATCATACT
Seq A exon
TATATCAGTTACAGCAAGAGGCACCTCGTCCCAAGAGAATCATTTGTCCTCGGGAG
Seq C2 exon
GTGGAAAACAGACCAAAATATTATGGAAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000106069-'34-58,'34-52,36-58
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.009 A=0.210 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGAAGAATACCAGCCTCCT
R:
TCCATAATATTTTGGTCTGTTTTCCA
Band lengths:
65-121
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development