RnoEX6013633 @ rn6
Exon Skipping
Gene
ENSRNOG00000009411 | Chn2
Description
chimerin 2 [Source:RGD Symbol;Acc:620140]
Coordinates
chr4:84332875-84371378:+
Coord C1 exon
chr4:84332875-84332913
Coord A exon
chr4:84350150-84350205
Coord C2 exon
chr4:84371347-84371378
Length
56 bp
Sequences
Splice sites
3' ss Seq
ATCATCTTTTCTTTTGGCAGTGT
3' ss Score
7.73
5' ss Seq
GAGGTCGGT
5' ss Score
5.44
Exon sequences
Seq C1 exon
ATGCTGAGGAATACCAGCCTCCAATATGGAAATCATACT
Seq A exon
TGTATCAGCTCCAGCAAGAGGCACCTCGTCCCAAGAGGATCATTTGTCCCCGGGAG
Seq C2 exon
GTGGAAAACAGACCAAAATATTATGGAAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009411-'6-8,'6-3,14-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.211 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATACCAGCCTCCAATATGGA
R:
TCCATAATATTTTGGTCTGTTTTCCA
Band lengths:
60-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]