BtaEX6027752 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020931 | CHN2
Description
CHN2 protein; Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q0VD41]
Coordinates
chr4:67194879-67236863:-
Coord C1 exon
chr4:67236825-67236863
Coord A exon
chr4:67227404-67227459
Coord C2 exon
chr4:67194879-67194910
Length
56 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTTCTGTTTGGCAGTGT
3' ss Score
8.7
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ATGCTGAAGAATACCAGCCTCCAATATGGAAATCATACT
Seq A exon
TGTATCAGTTACAGCAAGAGGCCCCTCGTCCCAAGAGGATCATTTGTCCTGGGGAG
Seq C2 exon
GTGGAAAACAGACCAAAATATTATGGAAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020931-'3-3,'3-1,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGAATACCAGCCTCCA
R:
TCCATAATATTTTGGTCTGTTTTCCA
Band lengths:
64-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]