MmuEX0011337 @ mm9
Exon Skipping
Gene
ENSMUSG00000004633 | Chn2
Description
chimerin (chimaerin) 2 [Source:MGI Symbol;Acc:MGI:1917243]
Coordinates
chr6:54123458-54165687:+
Coord C1 exon
chr6:54123458-54123496
Coord A exon
chr6:54144020-54144075
Coord C2 exon
chr6:54165656-54165687
Length
56 bp
Sequences
Splice sites
3' ss Seq
ATCTTTTTTTCTTTTGGCAGTGT
3' ss Score
8.07
5' ss Seq
GAGGTCCGT
5' ss Score
4.55
Exon sequences
Seq C1 exon
ATGCTGAGGAATACCAGCCTCCAATATGGAAATCATACT
Seq A exon
TGTATCAGCTGCAGCAAGAGGCACCTCGTCCCAAGAGGATCATTTGTCCCCGGGAG
Seq C2 exon
GTGGAAAACAGACCAAAATATTATGGAAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004633_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.140 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATACCAGCCTCCAATATGGA
R:
TCCATAATATTTTGGTCTGTTTTCCA
Band lengths:
60-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: