GgaEX0016746 @ galGal3
Exon Skipping
Gene
ENSGALG00000011164 | CHN2
Description
NA
Coordinates
chr2:33632512-33658016:+
Coord C1 exon
chr2:33632512-33632550
Coord A exon
chr2:33642527-33642582
Coord C2 exon
chr2:33657985-33658016
Length
56 bp
Sequences
Splice sites
3' ss Seq
TACATTTTTGTCTTTGACAGTGT
3' ss Score
8.6
5' ss Seq
GAGGTCAGT
5' ss Score
7.7
Exon sequences
Seq C1 exon
ATGCTGAAGAATACCAGCCTCCAATATGGAAATCGTACT
Seq A exon
TGTATCAGTTACAACAAGAGGCACCACGTCCCAAGAGAATCATCTGTCCTCGGGAG
Seq C2 exon
GTGGAGAACAGACCAAAGTATTACGGAAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011164-'1-3,'1-2,2-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0001719=SH2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGAATACCAGCCTCCA
R:
TCTCTTCCGTAATACTTTGGTCTGT
Band lengths:
69-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]