HsaEX0027986 @ hg19
Exon Skipping
Gene
ENSG00000167195 | GOLGA6C
Description
golgin A6 family, member C [Source:HGNC Symbol;Acc:32206]
Coordinates
chr15:75561980-75562540:+
Coord C1 exon
chr15:75561980-75562083
Coord A exon
chr15:75562173-75562326
Coord C2 exon
chr15:75562413-75562540
Length
154 bp
Sequences
Splice sites
3' ss Seq
CTGAGCACCCCTCCCTTCAGGTG
3' ss Score
8.48
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
Exon sequences
Seq C1 exon
GAGAGTCCTTCACCGTATATGAAAGCCAGGGGGCAGTGCCAAACACGCGGCACCAGGAGATGGAGGATGTCATCAGGCTGGCCCAGAAGGAGGAGGAGATGAAG
Seq A exon
GTGAAGCTGCTGGAGCTGCAAGAGTTGGTGTTGCCCCTTGTGGGCAACCATGAGGGGCATGGCAAATTCCTCATCGCTGCCCAGAACCCTGCTGATGAGCCCACTCCAGGGGCCCCAGCCCCCCAGGAACTTGGGGCTGCCGGTGAGCAGGATG
Seq C2 exon
ATTTTTATGAAGTGAGCCTGGACAACAACGTGGAGCCTGCACCAGGAGCGGCCAGGGAGGGTTCTCCCCATGACAACCCCCCGGTACAGCAGATCGTGCAGCTGTCTCCTGTCATGCAGGACACCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167195_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=0.654 C2=0.976
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(20.7=100)
A:
PF150701=GOLGA2L5=FE(31.1=100)
C2:
PF150701=GOLGA2L5=PD(25.0=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCACCGTATATGAAAGCCAGG
R:
CTAGGTGTCCTGCATGACAG
Band lengths:
226-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)