HsaEX0036817 @ hg19
Exon Skipping
Gene
ENSG00000148356 | LRSAM1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:HGNC Symbol;Acc:25135]
Coordinates
chr9:130224531-130236210:+
Coord C1 exon
chr9:130224531-130224652
Coord A exon
chr9:130230019-130230109
Coord C2 exon
chr9:130236080-130236210
Length
91 bp
Sequences
Splice sites
3' ss Seq
GGTTACCCTTGTGTCTGCAGATG
3' ss Score
9.21
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACAACAAGCTGAAGGAGCTTCCAGACACCGTGGGGGAGCTTCGAAGCCTGCGTACCCTCAACATCAGTGGAAACGAGATCCAGAGATTGCCGCAGATGCTGGCTCACGTTCGAACCCTGGAG
Seq A exon
ATGCTGAGCCTTGACGCCTCGGCCATGGTCTACCCGCCGCGGGAGGTGTGTGGTGCCGGCACTGCGGCCATCTTGCAGTTCCTCTGCAAAG
Seq C2 exon
AGTCAGGGCTGGAATACTACCCCCCTTCTCAGTACTTGCTGCCAATTCTGGAGCAAGATGGAATCGAGAACTCTCGGGACAGCCCTGATGGGCCCACGGACAGATTCTCAAGGGAGGAGTTAGAGTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148356_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(77.8=85.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGGAGCTTCCAGACAC
R:
TCTTGCTCCAGAATTGGCAGC
Band lengths:
173-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)