DreEX0043985 @ danRer10
Exon Skipping
Gene
ENSDARG00000060683 | lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-060526-97]
Coordinates
chr5:32279375-32280114:-
Coord C1 exon
chr5:32279993-32280114
Coord A exon
chr5:32279768-32279858
Coord C2 exon
chr5:32279375-32279484
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTGTATATGTGTGGTTTCAGAGC
3' ss Score
8.16
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GGAACTGCCTTACTGTGTTGCCTGTGTCTGTGGGTCGCATGAGCAGCCTGCGGACACTCGACATAAGTGAGAACAGCATCAGAGAATTACCCAAAGAACTGGCCAGTGTTCGCACTCTGGAA
Seq A exon
AGCCTGATCCTGGACGCACAGGTTATGAGCTTTCCACCTGCGTCAGTGTGTACAGGCGGCACAGAGGAAGTGCAGCGCTACCTCTGCTCAG
Seq C2 exon
ATATGGGTCTGGAGTATTGTCCTCCATCTCAGTATCTCCTGCCTGTGCTGGAGCATGATGGAGGGAAGCAGGAGATGGACTGTGTTGATGGTGAGGAGATAGTCTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060683-'10-11,'10-10,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF138551=LRR_8=FE(71.4=100)
A:
PF138551=LRR_8=PD(8.9=16.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGTTGCCTGTGTCTGTG
R:
CTGCTTCCCTCCATCATGCTC
Band lengths:
182-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]