RnoEX0051214 @ rn6
Exon Skipping
Gene
ENSRNOG00000022312 | Lrsam1
Description
leucine rich repeat and sterile alpha motif containing 1 [Source:RGD Symbol;Acc:1564403]
Coordinates
chr3:11995869-12001645:-
Coord C1 exon
chr3:12001551-12001645
Coord A exon
chr3:11999002-11999092
Coord C2 exon
chr3:11995869-11995999
Length
91 bp
Sequences
Splice sites
3' ss Seq
GGGGTTCCCTGTGTCCACAGACG
3' ss Score
9.2
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACAACAAGCTAAAGGAGCTTCCGGACACCCTGGGGGAGCTGCGGAGCCTGCGTACCCTCGACATCAGTGAAAATGAGATCCAGAGACTTCCCCAG
Seq A exon
ACGCTGAGCCTCGATGCCTTGTCAATGGTCTACCCCCCACCAGAGGTGTGTGGCGCTGGCACTGCGGCCGTGCAGCAGTTCCTCTGCAAAG
Seq C2 exon
AGTCAGGCCTGGACTATTACCCACCTTCTCAGTACCTGCTGCCAGTCCTGGAGCAAGATGGAGCCGAGAACTCCCAGGACAGCCCTGATGGACCCACACGCAGATTCTCCAGGGAGGAGGCTGAATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022312_MULTIEX1-1/16=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.636
Domain overlap (PFAM):
C1:
PF127992=LRR_4=PD(79.5=85.4),PF153711=DUF4599=PU(43.4=87.8)
A:
PF153711=DUF4599=FE(36.1=100)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTACCCTCGACATCAGTGA
R:
CATTCAGCCTCCTCCCTGGA
Band lengths:
173-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]